CX671379

Overview
NameCX671379
Unique NameCX671379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623
            + F++I+R+   +VDG  K+ +AL  +KGIG   A  +  K  +D ++R GELS  ++ ++   + + +  ++P+W  NR+KDY+ G    +V++ L   +R+D+ER KKI++ RG+RH  GL+VRGQ
Sbjct:    5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = -1
Query:  240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626
            NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD     G L   E+ +L   + N     +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.293e-21
Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = -1
Query:  240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D ++  V      ++P+W  N QKD+  G  +  + N L M  R D+ R+KKI  +RG+RH  G +VRGQ
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 48/131 (36.64%), Postives = 82/131 (62.60%), Query Frame = -1
Query:  240 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 632
            +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++     +D N   G LS  ++ +L   + +  + ++P W LNRQ D   G    ++   + + L++DL  LKK R +RGLRH  GL+VRGQ
Sbjct:    1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQ 130          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = -1
Query:  240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626
            +++  + +RV NT++DG + ++ +LT IKG+GR  A  + + A V+ N   G+L  A +D++  VV+N    +IP W  NR KD   G    ++   + M + DD+  LKKIR +RG+RH  G +VRGQ
Sbjct:    5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQ 132          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  186 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 635
            +     F++I+R+   ++DG  K+ + L SIKGIG   A  V +   +D  K+ G L+  E+ +L  V+ +  Q  +P W  NR+KDY+ G+   ++ + L    R D+ER  KI + RG+RH +GL+VRGQ             V KKR
Sbjct:    1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  240 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 617
            F+HI+R+ +T++DG + +MFALT IKGIG R A  +  +  VD   + GEL    ++++   V    +  +P W LNR+KD   G+   ++S  +D     D+ERL K++ +RG+RH  G +VRGQ
Sbjct:    3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  240 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 623
            ED ++ +R+  T++DG + +  ALT + GIG R A I+ +KADVD     G+L    +++++  V N     +P+W  N QKDY  G  +    N L +  R D+ R+K I ++RG+RH  G +VRGQ
Sbjct:   18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 46/127 (36.22%), Postives = 80/127 (62.99%), Query Frame = -1
Query:  240 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 620
            +F++I+RV   ++ G + +++AL  IKGIG   A  V KK  +D  +  G LS  E+++L   +    +  +P W LNR+KD   G    ++++ L + +R+D+E +KKI++++G+RH  GL+VRGQ
Sbjct:    4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQ 130          
BLAST of CX671379 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 43/129 (33.33%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  240 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDQLMVVVANPRQFKIPDWFLNRQKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 626
            +++ + I+R+ +T++DG +++ ++LT I+GIG   A  +C+K  +D +   G LS  ++++L   V N  +   P WFLNR+KD + G+   ++   L +  + D++ +KK+++ +G+RH  GL+VRGQ
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129          
The following BLAST results are available for this feature:
BLAST of CX671379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_SULTO2.517e-2137.5030S ribosomal protein S13P OS=Sulfolobus tokodaii ... [more]
RS13_METBF2.517e-2139.5330S ribosomal protein S13P OS=Methanosarcina barke... [more]
RS13_NATPD4.293e-2138.7630S ribosomal protein S13P OS=Natronomonas pharaon... [more]
RS13_METBU8.096e-2036.6430S ribosomal protein S13P OS=Methanococcoides bur... [more]
RS13_METHJ2.356e-1937.9830S ribosomal protein S13P OS=Methanospirillum hun... [more]
RS13_AERPE2.356e-1934.6730S ribosomal protein S13P OS=Aeropyrum pernix GN=... [more]
RS13_ARCFU5.248e-1938.8930S ribosomal protein S13P OS=Archaeoglobus fulgid... [more]
RS13_HALMA1.169e-1837.5030S ribosomal protein S13P OS=Haloarcula marismort... [more]
RS13_THEPD2.604e-1836.2230S ribosomal protein S13P OS=Thermofilum pendens ... [more]
RS13_PYRIL1.688e-1733.3330S ribosomal protein S13P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10G02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10G02-M4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671379 ID=CX671379; Name=CX671379; organism=Citrus sinensis; type=EST; length=728bp
TGACTTTTTAATCACAATATCAAATGGAATTCCTTTCAATTCAGTCAAAA
AGACAACCTAAGAAAATAAACTGAAGAAAATTATCAAAAACAATTCTTCT
ACAAGACAGACATACTGAACGATGCAAAACTAACATGTAAACAAAACTTG
CAGCTTGATGAACCAATAGGAGATGACAAAACTCAACGCTTCTTGGAGAC
ACCAACGGTCTTTCCCCTGCGTCCAGTAGTCTTGGTGTGCTGTCCACGAA
CTCTAAGACCCCAGTAGTGTCGTAGACCACGGTGGTTTCTGATCTTCTTC
AAGCGCTCAAGATCATCCCTAAGCTTCATGTCCAATGCATTAGACACGAC
CTGGGAGTACCTCCCATCCTTGTAATCCTTTTGCCTGTTAAGAAACCAGT
CTGGGATCTTAAACTGGCGTGGATTTGCCACAACCACCATCAGTTGGTCA
AGCTCAGCGGCAGAGAGCTCACCAGCTCTTTTGTTCATGTCGACATCAGC
TTTCTTGCAGACAATATTGGCCAAACGGCGACCGATACCCTTAATGGATG
TGAGAGCAAACATGATCTTTTGTTTCCCATCAACATTCGTGTTCAGAACA
CGAAGAATGTGTTGAAAATCCTCGTTGGCTACCAGAGACATGGCTGGAGA
TGTTCGTTTCTCTTTTTTCCTTTATGGTTGACTTTTGTGCCTTCGCCTTC
TCCGGAGGTGAGTGTAAATGGAGGTATG
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