CX671376

Overview
NameCX671376
Unique NameCX671376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.207e-18
Identity = 68/257 (26.46%), Postives = 118/257 (45.91%), Query Frame = 2
Query:   86 PIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK-GLESVQSEVN-DLDWESTFFLRHLP----VSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIK----GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            P++DL+  +         +I +AC ++GFF+LVNHG+  EL+  ++      + K   ++ +       G  S +   N D+ W     L   P      ++    +    +R  ++ +   ++ +                          +      ++++YPPCP+   +     G   HTD   II + + +  SGLQ+ L D  WV VPP + S  IN+GD L+V+TNG++KSV HRV+A T  +R+S+  F
Sbjct:   28 PVVDLTHPDAKN------LIVNACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAGPPDPFGYGSKRIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQ-IISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYF 277          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 69/260 (26.54%), Postives = 121/260 (46.54%), Query Frame = 2
Query:   71 TMENFPIIDLSKLNGDE--RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLESVQSEVNDL------DWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQ-TEGNRMSIASF 823
            T+   P IDL  +      R + +  + DA E +GFF+ +NHG+  ++++ +    +  + +  + R       K  +       DL       W  T      P  ++ +  DL +   + M E++ E+ K+A                  K++   +KG         +PPCP+P+   G   HTD   + +L  D+   GLQ+L D  W+DVPP   +++ N+GD L++I+N K+ S+ HR++A   E  R+S+A F
Sbjct:   51 TVVMIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAP--DVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDC-AKG--LWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACF 304          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.075e-17
Identity = 71/264 (26.89%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   68 ITMENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK---GLESVQSEVN-DLDWESTFFLRHLPV----SNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKP--DLIK-GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            +T  + P+++L+      R      I  ACE +GFF++VNHG+  EL+  +++     +G  + Q  K         G  + +   N D+ W     L   P        A        +R++++E+  E+++V+                         +      ++++YP   +    ++K G   HTD   II + + +  +GLQ+ +KD  WV VPP   S  IN+GD L+V+TNG++KSV HRV+A T  +R+S+  F
Sbjct:   26 LTSHSIPVVNLADPEAKTR------IVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFG--LPQSLKNRAGPPEPYGYGNKRIGPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYF 280          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.768e-16
Identity = 72/274 (26.28%), Postives = 115/274 (41.97%), Query Frame = 2
Query:   74 MENFPIIDLSKLNGDERSATM---------EMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLESVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            + + P++D S   G+  +  +         E +  A ++WG F LV HG+  +LL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   E +R+S+  F
Sbjct:   31 LHDHPVVDGSGAGGEPDAVPVVDMRDPFAAEAVGLAAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYF 303          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.143e-16
Identity = 67/274 (24.45%), Postives = 115/274 (41.97%), Query Frame = 2
Query:   71 TMENFPIIDLSKL-----NGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQR--FKQMVASKGLESVQSEV-----NDLDWESTFFLRHLP--VSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXX--KKVFYGSKGPTFGT-------KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            T    P++D+S          +R   +E +  A  +WG   +  HGI  EL+D ++      +   +  +  +    A+  L+   S +        +WE   F    P  +++ A  P    DY  A ++F      +A                    +K    +   T          K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQ+L   +WV       +I++++GD LE+++NG+Y SVLHR +   E  R+S   F
Sbjct:   54 TAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVF 326          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.717e-16
Identity = 71/274 (25.91%), Postives = 113/274 (41.24%), Query Frame = 2
Query:   74 MENFPIIDLSKLNGDERSATMEMINDAC---------ENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLESVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            + + P++D S   G   +  +  + D C         ++WG F L  HG+  ELL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F
Sbjct:   31 LHDHPVVDGSGAGGGPDAVPVVDMRDPCAAEAVALAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYF 303          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.496e-15
Identity = 71/274 (25.91%), Postives = 113/274 (41.24%), Query Frame = 2
Query:   74 MENFPIIDLSKLNGDERSATMEMINDAC---------ENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLESVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            + + P++D S   G   +  +  + D C         ++WG F L  HG+  ELL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F
Sbjct:   31 LHDHPVVDGSGAGGGPDAVPVVDMRDPCAAEAVALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYF 303          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 69/259 (26.64%), Postives = 112/259 (43.24%), Query Frame = 2
Query:   80 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHY--------GKCMDQRFKQMVASKGLESVQSEVNDLDWESTFFLR-HLPVSN-MAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGS-KGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            + PIIDLS    + R + +E    A +  GFF++VNHG+S +++  ++ + ++ +            ++R K      G  +      +  W     L    PV + + E PD     R  +++F  +   V                      F G   G      +++YP CP PD   G   H D   I LL     V+GL++     W+ V P  ++ V+N G QLEV+TNG  KS+ HR +  +   R S+A+F
Sbjct:   34 SLPIIDLSCGRDEVRRSILE----AGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSG--ATYDTGGEKYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADY----FEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLPG-AVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATF 281          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  557 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            YPPCP+P+   G   H D   + +L QDD V GL++L D +W  V P+  ++VIN+GD    ++NG+YKS LHR +      R S+A F
Sbjct:  234 YPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFF 321          
BLAST of CX671376 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  557 YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASF 823
            YPPCP+P+   G   H D   + +L QDD V GL++L D +W  V P+  ++VIN+GD    ++NG+YKS LHR +      R S+A F
Sbjct:  234 YPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFF 321          
The following BLAST results are available for this feature:
BLAST of CX671376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G2OX_PHACN4.207e-1826.46Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
GSL_ARATH2.088e-1726.54Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G2OX2_ARATH6.075e-1726.89Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3O23_WHEAT1.768e-1626.28Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
LDOX_MAIZE5.143e-1624.45Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G3O22_WHEAT6.717e-1625.91Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT1.496e-1525.91Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
IDS3_HORVU2.553e-1526.642'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAOX2_ORYSJ4.354e-1542.70Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI4.354e-1542.70Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10F12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F12-K24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671376 ID=CX671376; Name=CX671376; organism=Citrus sinensis; type=EST; length=824bp
CCTGGCTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGATTGTGGG
AGTTAAGAAACAAACAAATAACAATGGAGAATTTTCCAATTATTGACTTG
TCAAAGCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGATCAATGA
TGCCTGTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGGATATCAC
ATGAGCTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTACGGGAAG
TGTATGGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCCTTGAATC
TGTTCAGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTCTTCTTGC
GCCACCTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGAAGATGAT
TACAGGAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAAGGTTGCTGA
GCAACTTCTGGAATTGTTGTGTGAGAATCTTGGGCTGGAGGAAGGGTATT
TGAAGAAAGTGTTTTATGGGTCCAAAGGACCAACCTTTGGCACCAAGGTC
AGCAATTACCCTCCATGCCCAAAACCAGATCTGATCAAGGGACTTAGGGC
CCATACTGATGCTGGTGGCATCATCTTGCTCTTTCAAGATGACGAAGTCA
GTGGCCTCCAGCTGCTCAAAGATGACCAATGGGTTGATGTTCCACCCATG
AAACACTCCATTGTCATCAACCTCGGTGACCAACTTGAGGTGATAACCAA
TGGCAAGTACAAGAGTGTGCTACATCGCGTGATTGCTCAAACAGAGGGTA
ACAGGATGTCCATAGCATCATTTT
back to top