CX671374

Overview
NameCX671374
Unique NameCX671374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3056 contig Csv1_Contig3056:80..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 376.711 bits (966), Expect = 8.175e-104
Identity = 167/237 (70.46%), Postives = 200/237 (84.39%), Query Frame = 1
Query:   91 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N P+ DGIDDESY  +FK
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFK 243          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 8.175e-104
Identity = 169/239 (70.71%), Postives = 200/239 (83.68%), Query Frame = 1
Query:   85 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            T G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   D+ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N  L DGIDDESY  +FK
Sbjct:    4 TLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDESYEAIFK 242          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.107e-103
Identity = 166/239 (69.46%), Postives = 200/239 (83.68%), Query Frame = 1
Query:   85 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            + G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVM+VSFHK+G+YFPGTGD+RDIG  KGK+Y++N PL DGIDDESY  +FK
Sbjct:    4 SQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFK 242          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 6.921e-103
Identity = 173/251 (68.92%), Postives = 204/251 (81.27%), Query Frame = 1
Query:   55 DTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ--LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            D  G SLPSG DG KR+V YFY+P +G+YYYGQGHPMKPHRIRM H+L+ HY L + +++ +P  A   D+ RFH+ +YV FL S++PE+  D    R L+RFNVGEDCPVFDGLF FC+  AGGS+G AVKLN    DIAINW GGLHHAKK EASGFCYVNDIVL ILELLK  +RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG IRD+G  KGK+Y+LNVPL+DG+DDES+  LF+
Sbjct:    4 DESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFR 254          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.462e-100
Identity = 160/234 (68.38%), Postives = 196/234 (83.76%), Query Frame = 1
Query:   97 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLF 798
            K++VCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ +FH+D+YV FLRSI P+   +  +Q++RFNVGEDCPVFDGL+ FCQ  AGGSV  AVKLN    +I INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N+PL DG+DD++Y  +F
Sbjct:    6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIF 239          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 7.162e-100
Identity = 163/234 (69.66%), Postives = 195/234 (83.33%), Query Frame = 1
Query:  100 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            RKV YFYD EVGN+YYG  HPMKPHR+RMTH L+ +YG+ + MQ+ +P  A E +L  FH+DDY++FL+ +TP+   D  +QL +FNV EDCPVFDG+++FCQ  +GGS+G AVK+N    D+AINWAGGLHHAKK EASGFCY NDIVL+ILELLK HERVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+GDYFPGTGD++DIG  KGK+YSLN PL DGIDDESY  +F+
Sbjct:    4 RKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGDYFPGTGDVKDIGADKGKYYSLNFPLKDGIDDESYQSIFR 237          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.304e-98
Identity = 162/237 (68.35%), Postives = 194/237 (81.86%), Query Frame = 1
Query:   91 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVS     + FPGTGD+RDIG  KGK+Y++N P+ DGIDDESY  +FK
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSEVSMVNNFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFK 243          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.547e-97
Identity = 159/235 (67.66%), Postives = 192/235 (81.70%), Query Frame = 1
Query:   97 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            KR+V Y+YD  +GNYYYGQGH MKPHRIRMTH L+ +YGL +N+++ +PFPA   D+ RFH+D+Y++FL+S  P+  +   +Q+ +FNVGEDCP+FDGL+ FCQ  +GGS+  A KLN    DIAINW GGLHHAKK EASGFCY NDIVL ILELLK H+RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHK+GD+FPGTGD++DIG  KGK YS+NVPL DGI D SY  +FK
Sbjct:   12 KRRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKDIGAGKGKLYSVNVPLRDGITDVSYQSIFK 246          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 4.804e-96
Identity = 153/234 (65.38%), Postives = 189/234 (80.77%), Query Frame = 1
Query:  103 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            +  YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LNH +CDIAINWAGGLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ ++G   G++Y LNVPL DGIDD+SY  LF+
Sbjct:    4 RTSYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQ 237          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.070e-95
Identity = 153/234 (65.38%), Postives = 188/234 (80.34%), Query Frame = 1
Query:  103 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            +  YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG DCPVF GLF FC  Y G S+ GA +LNH +CDIAINWAGGLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ ++G   G++Y LNVPL DGIDD+SY  LF+
Sbjct:    4 RTAYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQ 237          
The following BLAST results are available for this feature:
BLAST of CX671374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC2_HUMAN8.175e-10470.46Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
HDA1A_XENLA8.175e-10470.71Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDA1B_XENLA3.107e-10369.46Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDA6_ARATH6.921e-10368.92Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_DROME2.462e-10068.38Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]
HDA11_DICDI7.162e-10069.66Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC2_CHICK2.304e-9868.35Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]
HDA1_CAEEL2.547e-9767.66Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
HDAC3_TETNG4.804e-9665.38Histone deacetylase 3 OS=Tetraodon nigroviridis GN... [more]
HDAC3_DANRE1.070e-9565.38Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F11-K22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671374 ID=CX671374; Name=CX671374; organism=Citrus sinensis; type=EST; length=803bp
AGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATATTATTCA
TATGGACACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCGTTAAGA
GAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTACTATGGA
CAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGCCCTTCT
CGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTTTTCCTG
CTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTCCTTC
CTCAGGAGTATCACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAA
GCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCT
TCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAAT
CACGGCCTCTGTGATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGC
TAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGG
CCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTAGATATT
GATATCCATCATGGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAG
GGTAATGACTGTTTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAG
GGGATATACGTGATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAAT
GTTCCTCTTGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAA
ACC
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