CX671374

Overview
NameCX671374
Unique NameCX671374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3056 contig Csv1_Contig3056:80..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.145e-90
Identity = 152/236 (64.41%), Postives = 191/236 (80.93%), Query Frame = 1
Query:   97 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            K +VCYF+D +VGNY+YG  HPMKPHR+ +T+ L+ +YGL + M + K  PA   D+ +FH++DYV FL  +TPE   ++ + +KRF++GEDCPVF GL+ +C  Y+GGS+ GA+KLNH + DIAINW+GGLHHA+K EASGFCYVNDIVLAILELLK H RVLY+DID+HHGDGV+EAFY TDRVMTVSFHKF GD+FPGTGDI +IG   GK YS+NVPL DGIDD++Y  +FK
Sbjct:   12 KTRVCYFFDQDVGNYFYGPYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENI-NEWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELLKFHARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGDFFPGTGDIDEIGAKTGKLYSVNVPLADGIDDKNYLNIFK 246          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.705e-78
Identity = 139/245 (56.73%), Postives = 179/245 (73.06%), Query Frame = 1
Query:   76 PSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE---TQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            P G D  KR V Y+Y  +VG+++YGQ HPMKP R+ + + L+  Y + + M V++       D+  FH +DYV+FL+++TP+   T  D +  L++FN+GEDCP+F GL+ +C  YAGGSV GA +LNH + DI INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DIDIHHGDGV+EAF  +DRVMTVSFH+FG YFPG+G I D G   GK++++NVPL   I DE Y  LF+
Sbjct:   21 PDGADVKKRNVAYYYHKDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDV--LRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQYFPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFE 263          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: PHD1_SCHPO (Histone deacetylase phd1 OS=Schizosaccharomyces pombe GN=phd1 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 9.419e-76
Identity = 132/236 (55.93%), Postives = 172/236 (72.88%), Query Frame = 1
Query:   97 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            K++V Y  D +VGNY+YG  HPMKPHRI +T+ L+  YGL   M V  P  A   ++  FH +DY+ FL+ +TP+  +    + ++FN+G+DCPVFDG + F Q  AG S+  + KL  G  DIAINW+GGLHHAK+ EASGFCYVNDIVLAIL +L+   RVLY+DIDIHHGDGV++AFY +DRV+TVSFHK+ GD+FP TG+  + G   GK+++LNVPL+DGI DE Y  LFK
Sbjct:   25 KKRVTYHLDEQVGNYHYGDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGNFDENGVKGGKYFALNVPLEDGIGDEQYTSLFK 260          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.747e-73
Identity = 127/235 (54.04%), Postives = 172/235 (73.19%), Query Frame = 1
Query:  103 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLR-QLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            +V Y ++ +V +Y+YG  HPMKP R+ +T  L++ YGL + M + +   A   +L +FH++DYV+FL  ++PE      R  L+ FN+G+DCP+F  L+ +   Y G S+    KL +   DIAINW+GGLHHAKK   SGFCYVNDIVL+IL LL+ H R+LY+DID+HHGDGV+EAFYTTDRV T+SFHK+ G++FPGTGD+ +IG  KGK ++LNVPL+DGIDD+SY  LFK
Sbjct:   27 RVSYHFNSKVSHYHYGVKHPMKPFRLMLTDHLVSSYGLHKIMDLYETRSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQNLYDYTTLYTGASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHPRILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVPLEDGIDDDSYINLFK 261          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA7_ARATH (Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.318e-72
Identity = 140/248 (56.45%), Postives = 170/248 (68.55%), Query Frame = 1
Query:   73 LPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ----LRQLKRFNVGEDC--PVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLF 798
            + S  DG KR+V YFY+P +G+YYYG   P KP RIR+TH L+  Y L ++M++  P  A   D  +FH+ +Y++FL+S+TPET  D        LKRFNV  D   PVF  LF +C+ YAGGS+  A KLN    DIAINWAGG+HH KK +ASGF YVND+VLAILELLK  +RVLY++I   HGD VEEAF  TDRVMTVSFHK GD    TGDI D G  KG++YSLN PL DG+DD S   LF
Sbjct:    1 MASLADGGKRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASDFEKFHSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGSISAAAKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSFHKVGD----TGDISDYGEGKGQYYSLNAPLKDGLDDFSLRGLF 244          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.976e-58
Identity = 114/235 (48.51%), Postives = 150/235 (63.83%), Query Frame = 1
Query:  100 RKVCYFYDPEVGNYYYGQGHPMK-PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLF 798
            R V Y Y PE   Y        K P+R  M H+L+  YGLL+ M+V+KP  A   ++  FH D Y+  L  I+ +   D   Q   F +G DCPV +G+F +     G ++  A  L  G CD+AINWAGG HHAKK EASG CYVND VL IL+L ++++RVLYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D G  KG++Y++NVP +DG+ D+ Y   F
Sbjct:   15 RSVVYVYSPE---YIQTCDSLSKVPNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDSYLQHLHKISQDGDNDD-PQSADFGLGYDCPVVEGIFDYAAAVGGATLTAAQNLLDGKCDVAINWAGGWHHAKKDEASGSCYVNDAVLGILKLREKYDRVLYVDVDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVTDTGLGKGRWYAVNVPFEDGVRDDRYCQTF 245          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.577e-57
Identity = 105/210 (50.00%), Postives = 142/210 (67.62%), Query Frame = 1
Query:  169 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 795
            P R  M H+L+  YGLL+ M+V+KP  A   ++  FH D Y+  L  ++ E   D    L+ + +G DCP+ +G++ +     G ++  A +L  G   IAINW GG HHAKK EASGFCY+ND VL IL+L ++ +RVLYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ DIG  KG++YS+NVPL DGI DE Y+ +
Sbjct:   27 PRRASMVHSLIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLE-YGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGILKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDIGLGKGRYYSVNVPLQDGIQDEKYYQI 235          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.741e-57
Identity = 100/210 (47.62%), Postives = 143/210 (68.10%), Query Frame = 1
Query:  169 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 795
            P R  M H+L+  Y L + M+++KP  A   ++  FH D Y+  L+ ++ E  +D    ++ + +G DCP  +G+F +     GG++  A  L  G C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ +R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+++
Sbjct:   35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIE-YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHI 243          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.741e-57
Identity = 100/210 (47.62%), Postives = 143/210 (68.10%), Query Frame = 1
Query:  169 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 795
            P R  M H+L+  Y L + M+++KP  A   ++  FH D Y+  L+ ++ E  +D    ++ + +G DCP  +G+F +     GG++  A  L  G C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ +R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+++
Sbjct:   35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIE-YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSDVGLGKGRYYSVNVPIQDGIQDEKYYHI 243          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 9.793e-57
Identity = 100/210 (47.62%), Postives = 141/210 (67.14%), Query Frame = 1
Query:  169 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 795
            P R  M H+L+  Y L + M+++KP  A   ++  FH D Y+  L+ ++ E   D    ++ + +G DCP  +G+F +     G ++  A  L  G+C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ ER+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+ +
Sbjct:   35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243          
The following BLAST results are available for this feature:
BLAST of CX671374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDA12_DICDI5.145e-9064.41Histone deacetylase B OS=Dictyostelium discoideum ... [more]
HDA2_CAEEL7.705e-7856.73Putative histone deacetylase 2 OS=Caenorhabditis e... [more]
PHD1_SCHPO9.419e-7655.93Histone deacetylase phd1 OS=Schizosaccharomyces po... [more]
HOS2_YEAST9.747e-7354.04Probable histone deacetylase HOS2 OS=Saccharomyces... [more]
HDA7_ARATH6.318e-7256.45Histone deacetylase 7 OS=Arabidopsis thaliana GN=H... [more]
HDAC8_DANRE3.976e-5848.51Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2... [more]
HDAC8_XENTR2.577e-5750.00Histone deacetylase 8 OS=Xenopus tropicalis GN=hda... [more]
HDAC8_RAT5.741e-5747.62Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac... [more]
HDAC8_MOUSE5.741e-5747.62Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=... [more]
HDAC8_HUMAN9.793e-5747.62Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F11-K22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671374 ID=CX671374; Name=CX671374; organism=Citrus sinensis; type=EST; length=803bp
AGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATATTATTCA
TATGGACACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCGTTAAGA
GAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTACTATGGA
CAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGCCCTTCT
CGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTTTTCCTG
CTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTCCTTC
CTCAGGAGTATCACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAA
GCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCT
TCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAAT
CACGGCCTCTGTGATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGC
TAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGG
CCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTAGATATT
GATATCCATCATGGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAG
GGTAATGACTGTTTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAG
GGGATATACGTGATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAAT
GTTCCTCTTGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAA
ACC
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