CX671374

Overview
NameCX671374
Unique NameCX671374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3056 contig Csv1_Contig3056:80..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++  A GFC+ N + +   +LL+Q     +VL VD DIHHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  Y++NV    G+D
Sbjct:  823 HHAEESTAMGFCFFNSVAITA-KLLQQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVD 920          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++  A GFC+ N + +   +LL+Q     +VL VD DIHHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  Y++NV    G+D
Sbjct:  832 HHAEESTAMGFCFFNSVAITA-KLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVD 929          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++  A GFC+ N + +   +LL+Q     +VL VD DIHHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  Y++NV    G+D
Sbjct:  821 HHAEESTAMGFCFFNSVAITA-KLLQQKLNVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGMGYNVNVAWTGGVD 918          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: Y1628_SYNP2 (Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1628 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 67/215 (31.16%), Postives = 100/215 (46.51%), Query Frame = 1
Query:  157 HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFL--RSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGA-VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESY 786
            H     + R+ H LL   G++Q  QV +P       L   H  DYV+     ++TP+ Q+          +G   P   G+     T  GG++  A + L HGL   A N AGG HHA     SGFC +ND+ +A   + ++   +R+L VD+D+H GDG    F     V T S H   + FP          S+ +   L++ L +G+DD+ Y
Sbjct:   19 HRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQR---------RIG--LPWSAGVVQRTLTAVGGTILTAQLALEHGL---ACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVN-FP----------SQKQRSDLDLGLPEGLDDDGY 208          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA    A GFC+ N + +A  +L +QH    ++L VD D+HHG+G ++ FY    V+ +S H+   G++FPG+G + ++G   G+ +++NV    G+D
Sbjct:  656 HHADHSTAMGFCFFNSVAIACRQL-QQHGKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGTGSGEGFNVNVAWAGGLD 753          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++  A GFC+ N + +   +LL+Q     +VL VD DIHHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  Y++NV    G+D
Sbjct:  832 HHAEESTAMGFCFFNSVAITA-KLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWIGGVD 929          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  +++N+    G+D
Sbjct:  798 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLD 895          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  +++N+    G+D
Sbjct:  795 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLD 892          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY+   V+ +S H++  G++FPG+G   ++G   G  +++N+    G+D
Sbjct:  802 HHAEESTPMGFCYFNSVAVAA-KLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLD 899          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 1
Query:  157 HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGS--VGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILE---LLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVP 756
            HP  P RI      L   GL     +L   PA   +L   H+ +YV  LR+      +D  R+   F+    CP     F+  +   G +  +  AV     L  IA+    G HHA+   A GFC+ N + +A      +  +  R+L VD D+HHG+G +  F     V+ VS H++  G +FP    G    +G   G  +++NVP
Sbjct:  499 HPETPQRILRIMCHLEEVGLAARCLILPARPALGSELLTCHSAEYVEHLRTTEKMKTRDLHREGANFDSIYICP---STFACAKLATGAACRLVEAVLSGEVLNGIAVVRPPG-HHAEPNAACGFCFFNSVAVAARHAQIIAGRALRILIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTVNVP 703          
The following BLAST results are available for this feature:
BLAST of CX671374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC5_MOUSE2.698e-1439.39Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=... [more]
HDAC5_HUMAN2.698e-1439.39Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=... [more]
HDAC5_CRIGR2.698e-1439.39Histone deacetylase 5 OS=Cricetulus griseus GN=HDA... [more]
Y1628_SYNP24.602e-1431.16Uncharacterized protein SYNPCC7002_A1628 OS=Synech... [more]
HDAC7_MOUSE4.602e-1436.36Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=... [more]
HDAC5_PONAB4.602e-1439.39Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=... [more]
HDAC4_CHICK4.602e-1436.36Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE... [more]
HDAC4_RAT7.850e-1436.36Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac... [more]
HDAC4_HUMAN1.025e-1336.36Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]
HDAC6_MOUSE1.749e-1329.67Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F11-K22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671374 ID=CX671374; Name=CX671374; organism=Citrus sinensis; type=EST; length=803bp
AGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATATTATTCA
TATGGACACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCGTTAAGA
GAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTACTATGGA
CAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGCCCTTCT
CGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTTTTCCTG
CTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTCCTTC
CTCAGGAGTATCACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAA
GCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCT
TCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAAT
CACGGCCTCTGTGATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGC
TAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGG
CCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTAGATATT
GATATCCATCATGGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAG
GGTAATGACTGTTTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAG
GGGATATACGTGATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAAT
GTTCCTCTTGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAA
ACC
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