CX671374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14 Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ A GFC+ N + + +LL+Q +VL VD DIHHG+G ++AFY V+ +S H++ G++FPG+G ++G G Y++NV G+D Sbjct: 823 HHAEESTAMGFCFFNSVAITA-KLLQQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVD 920
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14 Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ A GFC+ N + + +LL+Q +VL VD DIHHG+G ++AFY V+ +S H++ G++FPG+G ++G G Y++NV G+D Sbjct: 832 HHAEESTAMGFCFFNSVAITA-KLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVD 929
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14 Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ A GFC+ N + + +LL+Q +VL VD DIHHG+G ++AFY V+ +S H++ G++FPG+G ++G G Y++NV G+D Sbjct: 821 HHAEESTAMGFCFFNSVAITA-KLLQQKLNVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGMGYNVNVAWTGGVD 918
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: Y1628_SYNP2 (Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1628 PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14 Identity = 67/215 (31.16%), Postives = 100/215 (46.51%), Query Frame = 1 Query: 157 HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFL--RSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGA-VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESY 786 H + R+ H LL G++Q QV +P L H DYV+ ++TP+ Q+ +G P G+ T GG++ A + L HGL A N AGG HHA SGFC +ND+ +A + ++ +R+L VD+D+H GDG F V T S H + FP S+ + L++ L +G+DD+ Y Sbjct: 19 HRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQR---------RIG--LPWSAGVVQRTLTAVGGTILTAQLALEHGL---ACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVN-FP----------SQKQRSDLDLGLPEGLDDDGY 208
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14 Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA A GFC+ N + +A +L +QH ++L VD D+HHG+G ++ FY V+ +S H+ G++FPG+G + ++G G+ +++NV G+D Sbjct: 656 HHADHSTAMGFCFFNSVAIACRQL-QQHGKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGTGSGEGFNVNVAWAGGLD 753
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14 Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ A GFC+ N + + +LL+Q +VL VD DIHHG+G ++AFY V+ +S H++ G++FPG+G ++G G Y++NV G+D Sbjct: 832 HHAEESTAMGFCFFNSVAITA-KLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWIGGVD 929
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14 Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY V+ +S H++ G++FPG+G ++G G +++N+ G+D Sbjct: 798 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGSGAPDEVGTGAGVGFNVNMAFTGGLD 895
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14 Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY V+ +S H++ G++FPG+G ++G G +++N+ G+D Sbjct: 795 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLD 892
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13 Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY+ V+ +S H++ G++FPG+G ++G G +++N+ G+D Sbjct: 802 HHAEESTPMGFCYFNSVAVAA-KLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLD 899
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13 Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 1 Query: 157 HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGS--VGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILE---LLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVP 756 HP P RI L GL +L PA +L H+ +YV LR+ +D R+ F+ CP F+ + G + + AV L IA+ G HHA+ A GFC+ N + +A + + R+L VD D+HHG+G + F V+ VS H++ G +FP G +G G +++NVP Sbjct: 499 HPETPQRILRIMCHLEEVGLAARCLILPARPALGSELLTCHSAEYVEHLRTTEKMKTRDLHREGANFDSIYICP---STFACAKLATGAACRLVEAVLSGEVLNGIAVVRPPG-HHAEPNAACGFCFFNSVAVAARHAQIIAGRALRILIVDWDVHHGNGTQHIFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTVNVP 703 The following BLAST results are available for this feature:
BLAST of CX671374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671374 ID=CX671374; Name=CX671374; organism=Citrus sinensis; type=EST; length=803bpback to top |