CX671374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13 Identity = 66/234 (28.21%), Postives = 107/234 (45.73%), Query Frame = 1 Query: 157 HPMKPHRIRMTHALLAHYGLLQNM----QVLKPFPARE---RDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSV---GGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH----ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGT--GDIRDIGYSKGKFYSLNVPLD-DGIDDESYHYLFK 801 HP P R+ + G + N+ V PARE +L + H+ + + + T + + L L++ + D ++ +FC A GS AV A+ G HHA+ + GFC N++ + +L++ +RVL VD DIHHG+G + AFY V+ VS H++ G ++PGT G + G G ++N+P G+ D Y Y F+ Sbjct: 77 HPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTN-TEKMSHEDLANLEKIS---DSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPG-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQ 305
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.983e-13 Identity = 35/99 (35.35%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY V+ +S H++ G++FPG+G ++G G +++N+ G++ Sbjct: 794 HHAEESTPMGFCYFNSVAVAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLE 891
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12 Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQHE----RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGI 771 HHA+ +A GFC+ N++ + L ++ ++ +D D+HHG+G + +F V+ +S H+ G++FPGTG + +IG GK +S+N+P G+ Sbjct: 627 HHAEAEQALGFCFFNNVAVTAKVLQAKYPVQCAKIAIIDWDVHHGNGTQLSFDDDPNVLYMSLHRHDNGNFFPGTGSVTEIGKGAGKGFSVNIPFSGGV 725
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12 Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801 HHA GFC ++ +A + H +R+ +D D+HHG+G +AF + +S H+ G Y PGTG I DIG KG+ +LN+PL G D + +F+ Sbjct: 201 HHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSY-PGTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRTVFE 304
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12 Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1 Query: 514 ASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESY 786 ++GFC N+I A ++V+ +D D+HHG+G +E F+ +RV+ + FH+ G Y PGTGDI DIG + K +N+P D Y Sbjct: 136 SNGFCIFNNIAGAARLAKNYMKKVIIIDFDVHHGNGTQEIFWNDNRVIHIDFHQRGIY-PGTGDILDIGGEEAKGTKINLPFPAHSTDADY 225
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12 Identity = 53/207 (25.60%), Postives = 105/207 (50.72%), Query Frame = 1 Query: 181 RMTHAL--LAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTY--AGGSVGGAVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVP 756 R+T AL L GL + Q L A E +L H+ +Y++ ++ T +++L L + +D ++ T+ A + G A++L + A++ L HH+++ A+GFC N++ +A +++ +R+L VD D+HHG G++ F V+ S+H++ G+++P D +G +G+ +++N+P Sbjct: 30 RLTAALDGLRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQK-TQTLDKEELHTLSK--------QYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAARHAKQKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYFSWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLP 227
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12 Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQHE--RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESYHYLFK 801 HHA ++SGFC N++ +A ++H+ RVL +D D+HHG+G +E FY VM +S H+ G+++P D D+G G+ S+NVP + D Y F+ Sbjct: 560 HHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQ 669 HSP 2 Score: 67.781 bits (164), Expect = 8.123e-11 Identity = 63/225 (28.00%), Postives = 88/225 (39.11%), Query Frame = 1 Query: 157 HPMKPHRIRMTHALLAHYGLLQNMQVLKPF-PARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGA--------VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILE-LLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK--FGDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESY 786 HP RI L +L+ VL F + DL H V L +TQ+D + C +D +F + G A + N A+ G HHA GFC N++ A E ER+L VD+D+HHG G + FY RV+ S H+ G ++P D IG KG Y+ N+ L++ G D Y Sbjct: 34 HPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED---------INSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPG-HHADSVSPCGFCLFNNVAQAAEEAFFSGAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLFWPHLPESDFDHIGSGKGLGYNANLALNETGCTDSDY 248
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12 Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 493 HHAKKCEASGFCYVNDIVLAILELLKQHE----RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLD-DGIDDESY 786 HHA+ +A GFC+ N++ +A+ L ++ ++ +D D+HHG+G + +F V+ +S H+ G++FPGTG + ++G + K ++NVP D + D Y Sbjct: 554 HHAEHEQAMGFCFFNNVAVAVKVLQTKYPAQCAKIAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGTGSVTEVGKNDAKGLTVNVPFSGDVMRDPEY 658
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: Y1194_METTH (Uncharacterized protein MTH_1194 OS=Methanobacterium thermoautotrophicum GN=MTH_1194 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12 Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 1 Query: 394 FSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 795 FS + AGG++ A + ++ G HHA + GFC N+I +AI + R L +D D+HHG+G FY VM +S H+ FPGTG I + G +G+ ++LN+P+ G + Y ++ Sbjct: 85 FSVARLSAGGAMLAAEEALRDGWSYSLGRPPG-HHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQDPRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWI 220
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11 Identity = 56/208 (26.92%), Postives = 94/208 (45.19%), Query Frame = 1 Query: 166 KPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVP 756 +P R+ L GL Q L A E +L H+ +YVS +R ETQ +L+ + D F C A G+ ++L + A+ L HH ++ A+GFC N++ +A ++H R+L VD D+HHG G++ F V+ S+H++ G ++P D +G +G +++N+P Sbjct: 27 RPERLTAALDRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVR----ETQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGA---GLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAAHAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLP 227 The following BLAST results are available for this feature:
BLAST of CX671374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671374 ID=CX671374; Name=CX671374; organism=Citrus sinensis; type=EST; length=803bpback to top |