CX671374

Overview
NameCX671374
Unique NameCX671374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3056 contig Csv1_Contig3056:80..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13
Identity = 66/234 (28.21%), Postives = 107/234 (45.73%), Query Frame = 1
Query:  157 HPMKPHRIRMTHALLAHYGLLQNM----QVLKPFPARE---RDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSV---GGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH----ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGT--GDIRDIGYSKGKFYSLNVPLD-DGIDDESYHYLFK 801
            HP  P R+      +   G + N+     V    PARE    +L + H+ +    + + T +   + L  L++ +   D   ++   +FC   A GS      AV         A+    G HHA+  +  GFC  N++ +    +L++     +RVL VD DIHHG+G + AFY    V+ VS H++  G ++PGT  G   + G   G   ++N+P    G+ D  Y Y F+
Sbjct:   77 HPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTN-TEKMSHEDLANLEKIS---DSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPG-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQ 305          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.983e-13
Identity = 35/99 (35.35%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID 774
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G   ++G   G  +++N+    G++
Sbjct:  794 HHAEESTPMGFCYFNSVAVAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLE 891          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQHE----RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGI 771
            HHA+  +A GFC+ N++ +    L  ++     ++  +D D+HHG+G + +F     V+ +S H+   G++FPGTG + +IG   GK +S+N+P   G+
Sbjct:  627 HHAEAEQALGFCFFNNVAVTAKVLQAKYPVQCAKIAIIDWDVHHGNGTQLSFDDDPNVLYMSLHRHDNGNFFPGTGSVTEIGKGAGKGFSVNIPFSGGV 725          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 801
            HHA      GFC   ++ +A     + H  +R+  +D D+HHG+G  +AF     +  +S H+ G Y PGTG I DIG  KG+  +LN+PL  G  D +   +F+
Sbjct:  201 HHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSY-PGTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRTVFE 304          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  514 ASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESY 786
            ++GFC  N+I  A        ++V+ +D D+HHG+G +E F+  +RV+ + FH+ G Y PGTGDI DIG  + K   +N+P      D  Y
Sbjct:  136 SNGFCIFNNIAGAARLAKNYMKKVIIIDFDVHHGNGTQEIFWNDNRVIHIDFHQRGIY-PGTGDILDIGGEEAKGTKINLPFPAHSTDADY 225          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 53/207 (25.60%), Postives = 105/207 (50.72%), Query Frame = 1
Query:  181 RMTHAL--LAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTY--AGGSVGGAVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVP 756
            R+T AL  L   GL +  Q L    A E +L   H+ +Y++ ++  T    +++L  L +         +D ++    T+  A  + G A++L   +   A++    L     HH+++  A+GFC  N++ +A     +++  +R+L VD D+HHG G++  F     V+  S+H++  G+++P     D   +G  +G+ +++N+P
Sbjct:   30 RLTAALDGLRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQK-TQTLDKEELHTLSK--------QYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAARHAKQKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYFSWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLP 227          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQHE--RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESYHYLFK 801
            HHA   ++SGFC  N++ +A     ++H+  RVL +D D+HHG+G +E FY    VM +S H+   G+++P     D  D+G   G+  S+NVP     + D  Y   F+
Sbjct:  560 HHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQ 669          

HSP 2 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 63/225 (28.00%), Postives = 88/225 (39.11%), Query Frame = 1
Query:  157 HPMKPHRIRMTHALLAHYGLLQNMQVLKPF-PARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGA--------VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILE-LLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHK--FGDYFP--GTGDIRDIGYSKGKFYSLNVPLDD-GIDDESY 786
            HP    RI      L    +L+   VL  F    + DL   H    V  L     +TQ+D         +   C  +D +F    +      G A        +  N      A+    G HHA      GFC  N++  A  E      ER+L VD+D+HHG G +  FY   RV+  S H+   G ++P     D   IG  KG  Y+ N+ L++ G  D  Y
Sbjct:   34 HPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLMESEKKTQED---------INSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPG-HHADSVSPCGFCLFNNVAQAAEEAFFSGAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLFWPHLPESDFDHIGSGKGLGYNANLALNETGCTDSDY 248          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  493 HHAKKCEASGFCYVNDIVLAILELLKQHE----RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLD-DGIDDESY 786
            HHA+  +A GFC+ N++ +A+  L  ++     ++  +D D+HHG+G + +F     V+ +S H+   G++FPGTG + ++G +  K  ++NVP   D + D  Y
Sbjct:  554 HHAEHEQAMGFCFFNNVAVAVKVLQTKYPAQCAKIAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGTGSVTEVGKNDAKGLTVNVPFSGDVMRDPEY 658          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: Y1194_METTH (Uncharacterized protein MTH_1194 OS=Methanobacterium thermoautotrophicum GN=MTH_1194 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  394 FSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 795
            FS  +  AGG++  A +        ++    G HHA    + GFC  N+I +AI    +     R L +D D+HHG+G    FY    VM +S H+     FPGTG I + G  +G+ ++LN+P+  G  +  Y ++
Sbjct:   85 FSVARLSAGGAMLAAEEALRDGWSYSLGRPPG-HHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQDPRTLFPGTGFIDETGSGEGEGFNLNIPMPRGSGNREYLWI 220          
BLAST of CX671374 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 56/208 (26.92%), Postives = 94/208 (45.19%), Query Frame = 1
Query:  166 KPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFP--GTGDIRDIGYSKGKFYSLNVP 756
            +P R+      L   GL Q    L    A E +L   H+ +YVS +R    ETQ     +L+  +   D   F      C   A G+    ++L   +   A+     L     HH ++  A+GFC  N++ +A     ++H   R+L VD D+HHG G++  F     V+  S+H++  G ++P     D   +G  +G  +++N+P
Sbjct:   27 RPERLTAALDRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVR----ETQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGA---GLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAAHAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLP 227          
The following BLAST results are available for this feature:
BLAST of CX671374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CLR3_SCHPO2.284e-1328.21Histone deacetylase clr3 OS=Schizosaccharomyces po... [more]
HDAC4_MOUSE2.983e-1335.35Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=... [more]
HDA4_CAEBR1.133e-1233.33Histone deacetylase 4 OS=Caenorhabditis briggsae G... [more]
HDA14_ARATH1.133e-1236.19Histone deacetylase 14 OS=Arabidopsis thaliana GN=... [more]
Y535_METJA3.298e-1238.46Uncharacterized protein MJ0535 OS=Methanocaldococc... [more]
HDA10_RAT3.298e-1225.60Histone deacetylase 10 OS=Rattus norvegicus GN=Hda... [more]
HDA6_CAEEL5.625e-1235.45Histone deacetylase 6 OS=Caenorhabditis elegans GN... [more]
HDA4_CAEEL7.347e-1232.38Histone deacetylase 4 OS=Caenorhabditis elegans GN... [more]
Y1194_METTH9.596e-1232.12Uncharacterized protein MTH_1194 OS=Methanobacteri... [more]
HDA10_HUMAN2.138e-1126.92Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F11-K22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671374 ID=CX671374; Name=CX671374; organism=Citrus sinensis; type=EST; length=803bp
AGTTAGTGTTGGCTCTCCCAGTAAGTGCAGGCCCCAAGAAATATTATTCA
TATGGACACTGGAGGCAATTCTTTACCATCTGGTACTGATGGCGTTAAGA
GAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAATTACTACTATGGA
CAGGGTCACCCGATGAAACCCCATCGCATTCGTATGACCCATGCCCTTCT
CGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTCAAACCTTTTCCTG
CTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTCCTTC
CTCAGGAGTATCACCCCTGAGACTCAGCAGGATCAGCTTAGGCAGCTCAA
GCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGACGGTCTTTTCTCCT
TCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGCTGTCAAGTTGAAT
CACGGCCTCTGTGATATTGCTATCAATTGGGCCGGTGGCCTTCATCATGC
TAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAATGACATTGTCTTGG
CCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATTATATGTAGATATT
GATATCCATCATGGAGATGGCGTGGAGGAAGCATTTTATACAACTGATAG
GGTAATGACTGTTTCATTCCATAAGTTCGGAGATTATTTTCCTGGTACAG
GGGATATACGTGATATTGGTTATTCGAAAGGAAAGTTCTACTCCCTTAAT
GTTCCTCTTGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAA
ACC
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