CX671364

Overview
NameCX671364
Unique NameCX671364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2273 contig Csv1_Contig2273:458..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 41/185 (22.16%), Postives = 95/185 (51.35%), Query Frame = 1
Query:  181 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMV--NRCKRRLAEIAVKAVLAVADLERKDVNLDLIK 717
            + + A +    A+A  ++ +LGPKG + +++   G   IT DG ++ ++++++N+     A+L+ E++       GDGTT   V+A ++ +Q  KL+  G +P+ I  G + A    V  L++I++     + D + + Q    + N+     +     + ++  + V+ V + +  + +L+ ++
Sbjct:   11 EGRNAILRGVNALADAVKVTLGPKGRNVIIEKSFGSPLITKDGVSVAKEVELENKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYKQGSKLVAAGHNPMEIKRGIDKAVEAIVAELQKISKP----IKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETSLETVE 191          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 51/206 (24.76%), Postives = 105/206 (50.97%), Query Frame = 1
Query:  178 LDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            +DA+   +     +A  ++ +LGPKG + +L    G   IT DG ++ +++++    +N  A+++ E++   + E GDGTT   V+A +++++  K +  G++P+ +  G ++A+   VE ++  A+     +ND   + Q    + N +         +EI  +    +AD  +K  N  +I VE   G   E T+++ G+  D+
Sbjct:   10 IDARNRMLKGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVKEGMKSVAAGMNPMDLKRGIDLATSKVVEAIKSAARP----VNDSAEVAQVGTISANGE---------SEIGQQ----IADAMQKVGNEGVITVEENKGLETE-TDVVEGMQFDR 197          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 44/185 (23.78%), Postives = 96/185 (51.89%), Query Frame = 1
Query:  175 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIK 717
            G DA+++       +A  ++ +LGPKG + +L    G   ITNDG +I  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ I  G  MA   AVE +++I++  E G  D+  +    ++  + ++       + ++  + V+ + + +     LD+++
Sbjct:    8 GEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVE-GKEDIARV--AAISAADEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVE 189          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 44/185 (23.78%), Postives = 96/185 (51.89%), Query Frame = 1
Query:  175 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIK 717
            G DA+++       +A  ++ +LGPKG + +L    G   ITNDG +I  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ I  G  MA   AVE +++I++  E G  D+  +    ++  + ++       + ++  + V+ + + +     LD+++
Sbjct:    8 GEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVE-GKEDIARV--AAISAADEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVE 189          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 42/184 (22.83%), Postives = 95/184 (51.63%), Query Frame = 1
Query:  181 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIK 717
            D+ +A +  G   +A  ++ +LGPKG + +L+   G  T+T DG ++ +++++ +++    A+++ E++       GDGTT   V+A S++ +  K +  G++P+ +  G + A   A+E L +I++      N     V       ++ + +R    + ++  + V+ V D +     LD+++
Sbjct:   10 DSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAIEELRKISKPCT--TNKEIAQVGAISANSDTSIGDRIAEAMDKVGKEGVITVEDGKSLQDELDVVE 191          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 37/129 (28.68%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  181 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 555
            +A+++  +    +A  ++ +LGPKG + ++    G   ITNDG TI  ++++    +N  A+L+ E++   +   GDGTT   ++A +++ +  K +  G +P+ + +G + A  +AVE L+  +QK E
Sbjct:   10 EARRSLEAGVNKLADTVKVTLGPKGRNVIIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMILKKGIQKAVDVAVEELKNTSQKVE 138          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 38/130 (29.23%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  181 DAQKANVSAG-KAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV----DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 555
            D  + ++ AG  A+A  +R +LGPKG + +L+   G   I NDG T+ +++++    +N  AKL+ E++       GDGTT   ++A +L+ +  + +  G +P+ +  G E  +   V+ +E +A+  E
Sbjct:    9 DESRRSLEAGINALADAVRITLGPKGRNVLLEKQYGAPQIVNDGITVAKEIELSNPEENAGAKLIQEVASKTKEIAGDGTTTATIIAQALVREGLRNVAAGANPVALRRGIEKVTTFLVQEIEAVAKPVE 138          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 45/187 (24.06%), Postives = 93/187 (49.73%), Query Frame = 1
Query:  175 GLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVD----NQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNS--KMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIK 717
            G DA+   +     +A  ++ +LGPKG + +L    G  TIT DG ++  +++++    N  A+++ E++   +   GDGTT   V+A +++ +  K +  G++P+ +  G + A   AVE L+ ++ +     ND + + Q    + NS   + N     +  +    V+ V + +     LD+++
Sbjct:    9 GNDARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAAVEQLKELSVE----CNDTKAIAQVGTISANSDASVGNIIAEAMERVGRDGVITVEEGQALQDELDVVE 191          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 45/183 (24.59%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  181 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD----VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIK 717
            +A+KA       +A  ++ ++GPKG + +L+   G   I NDG TI ++++    ++N  A+LM E++   +   GDGTT   ++A S++++  K +  G +P+ +  G E  +   VE +   A+  E   N  E  V T     + ++     R +  +    V+ V + +  +  L++++
Sbjct:   10 EARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAE--VATISAGNDPEVGEMIARAMDAVGRDGVITVEESKSLETQLEVVE 190          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: CH601_SACEN (60 kDa chaperonin 1 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 39/129 (30.23%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  181 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI----AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFE 555
            DA++        +A  ++ +LGPKG + +L+   G  TITNDG +I +++++++      A+L+ E+++  D   GDGTT   V+A +L+ +  + +  G  PI +  G E A+    E L + A++ E
Sbjct:   10 DARRGLERGMNTLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPWEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGASPIALKRGIEKATEAIAEQLLKSAKEIE 138          
The following BLAST results are available for this feature:
BLAST of CX671364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
CH60_GEOLS7.909e-1122.1660 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH60_DINSH7.909e-1124.7660 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]
CH60_CLOBB7.909e-1123.7860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA7.909e-1123.7860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_BURP87.909e-1122.8360 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH60_ALKOO7.909e-1128.6860 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH602_SYNY37.909e-1129.2360 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH601_VIBPA7.909e-1124.0660 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH601_SYNJA7.909e-1124.5960 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH601_SACEN7.909e-1130.2360 kDa chaperonin 1 OS=Saccharopolyspora erythraea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671364 ID=CX671364; Name=CX671364; organism=Citrus sinensis; type=EST; length=790bp
ACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTTGTGAAGAGAAG
TGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGGATAGGAGAAAA
TGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATATTATTAAGGCAG
CAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAGAAAGCCAACGT
TTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTCCCTCGGACCCA
AAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACA
AATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGC
AAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATG
GTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAG
AAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGA
AATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGT
TTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACT
ACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGAT
TGCTGTCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCA
ATTTAGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGAC
ACTGAGCTAATATATGGAATTACTGTTGACAAGGATATGA
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