CX671364

Overview
NameCX671364
Unique NameCX671364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.300e-33
Identity = 80/224 (35.71%), Postives = 134/224 (59.82%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    +  L++I+   +  +N+ E ++    +++ +K+++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVD--VNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 224          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.310e-33
Identity = 79/220 (35.91%), Postives = 138/220 (62.73%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            P ILL++  + S+  G+    +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K +  +   + L +  MT L+SK++++ K   A++ V AV+ + +L    + L +I ++   GG LE+++L+ G+   K
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMMLDEL----LQLKMIGIKKVQGGALEESQLVAGVAFKK 218          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 79/220 (35.91%), Postives = 138/220 (62.73%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLE-PLVQTC-MTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            P ILL++  + S+  G+    +N++A + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   +    D +  L++ C  T L+SK++++ K   +++ V AV+ + DL    + L +I ++   GG LED++L+ G+   K
Sbjct:    5 PVILLKEGTDTSQ--GIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKK 218          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 79/225 (35.11%), Postives = 138/225 (61.33%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV---ADLERKDVNLD-LIKVEGKVGGRLEDTELIYGITVDKDM 789
            +P ++L Q  ++    G  AQ AN+SA KAV+ I+ ++LGP+ M KML  P G + +TNDG  IL ++DV++  AK M+EL+R QD E+GDGTT V++MAG ++  A+  +ER IHP  I   Y  A   +++ +E +A   +  +N+ + + +   + + +K  +R  + + ++A+KAV  +    +L++ ++ +    KVE   GG LED+ ++ G+  +KD+
Sbjct:    7 QPIMVLNQNTKRES--GKKAQLANISASKAVSEIVTSTLGPRSMLKMLLDPMGGIVMTNDGNAILREIDVNHPAAKSMIELARVQDEEVGDGTTSVIIMAGEMMSAAKPFIERDIHPSIIVTAYYRALEESIKKIEELAVPID--VNNDDQVNKALSSCIGTKFTSRWGKLITDLALKAVRTIMRGGNLQKLNLEIKRYAKVEKIPGGTLEDSVVLDGVMFNKDI 227          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.629e-33
Identity = 80/224 (35.71%), Postives = 134/224 (59.82%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    V  L++I+   +  +N+ + ++    +++ +K+++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMVSTLKKISTPVD--VNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 224          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 85/226 (37.61%), Postives = 133/226 (58.85%), Query Frame = 1
Query:  124 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE---RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            GRP ++L Q  ++    G   Q  N++A K +A I+RT LGP+ M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE+ LE+ +HP  I   Y  A    V  L+ I+   +   ND E +++   + +N+K +         IA+ AV  V +LE   RK++++    KVE   GG +ED+ ++ G+ V+KD+
Sbjct:    3 GRPVLVLSQNMKRES--GRKVQSGNINAAKTIADIIRTCLGPRAMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEQFLEQQMHPTVIISAYRKALDDMVNTLKEISTPVD--TNDRELMLKIINSAINTKAIKLWADMACGIALDAVKTV-ELEENGRKEIDIKKYAKVEKIPGGIIEDSCVLRGVMVNKDV 223          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.254e-32
Identity = 83/223 (37.22%), Postives = 135/223 (60.54%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEP---LVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDL--IKVEGKVGGRLEDTELIYGITVDK 783
            P +LL++  + ++ R    +  N++A + +  I++T+LGP+GMDK++ + + DVTITNDGAT++  +++ +  A ++V++++SQD E+GDGTT VVV+AG LL +A+ LL  GI P  I +G+  A  +A+  L  ++  F    N+ E    L++   T LNSK+V+  K    E+ V AV  + D      NLD   I ++   GG   DT+LIYG+   K
Sbjct:    8 PIVLLKEGTDTAQGRSQIIR--NINACQIIVDIVKTTLGPRGMDKLIYT-ERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFS-NKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYKLGD------NLDKSNIGIKKVTGGSCLDTQLIYGVAFKK 220          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.139e-32
Identity = 80/224 (35.71%), Postives = 131/224 (58.48%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK MVE+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      +ND + ++    +++ +K ++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMVEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 224          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.139e-32
Identity = 85/212 (40.09%), Postives = 134/212 (63.21%), Query Frame = 1
Query:  172 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQS-PDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA-------QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            RG +A+ ++     AV  +++++LGPKGMDK+LQS   GD+ +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V A  LL QAE ++   IHP  I +GY +A++ A++ L   +        KF    +DLE + +   TTL+SK++++ K   A++AV AVL +    +   NLD I++   +GG+L+D+ L  G  ++K
Sbjct:   17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFR---SDLENIAR---TTLSSKILSQNKNHFAQLAVDAVLRL----KGSTNLDNIQIIKILGGKLDDSFLDEGFILNK 218          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 79/213 (37.09%), Postives = 128/213 (60.09%), Query Frame = 1
Query:  163 SRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLN-DLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDM 789
            +R  G  AQ +N+ A KAVA ++RT LGP+ M KML  P G V +TNDG  IL +++V +  AK M+EL+R+QD E+GDGTT V+++AG +L  A  LL+R IHP+ +   ++ A   A+  ++ I        N ++  L++TC+ T   K+V R    +  +A++AV  VA      + +D+    +VE   GG +E + ++ G+ ++KD+
Sbjct:   13 NRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGT---KLVARWSDLMCHLALRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDV 222          
The following BLAST results are available for this feature:
BLAST of CX671364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
TCPG_MOUSE3.300e-3335.71T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPH_MOUSE4.310e-3335.91T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPH_CHICK5.629e-3335.91T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPG_TETPY5.629e-3335.11T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_RAT5.629e-3335.71T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_XENLA7.352e-3337.61T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPH_PLAF71.254e-3237.22T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPG_PONAB2.139e-3235.71T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPB_SCHPO2.139e-3240.09Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPG_SCHPO3.649e-3237.09T-complex protein 1 subunit gamma OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671364 ID=CX671364; Name=CX671364; organism=Citrus sinensis; type=EST; length=790bp
ACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTTGTGAAGAGAAG
TGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGGATAGGAGAAAA
TGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATATTATTAAGGCAG
CAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAGAAAGCCAACGT
TTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTCCCTCGGACCCA
AAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACA
AATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGC
AAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATG
GTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAG
AAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGA
AATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGT
TTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACT
ACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGAT
TGCTGTCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCA
ATTTAGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGAC
ACTGAGCTAATATATGGAATTACTGTTGACAAGGATATGA
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