CX671364

Overview
NameCX671364
Unique NameCX671364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 79/224 (35.27%), Postives = 130/224 (58.04%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+G GTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      +ND + ++    +++ +K ++R       IA+ AV  V   E  RK++++    KVE   GG +ED+ ++ G+ ++KD+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYAKVEKIPGGIIEDSCVLRGVMINKDV 224          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.128e-32
Identity = 81/222 (36.49%), Postives = 133/222 (59.91%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG----LNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            P I+L++  + S+ RG     +N++A  AV   +RT+LGP G DK++    G+V I+NDGATI++ +D+ +  AK +V+++R+QD E+GDGTT VVV AG LL +A   +E G+    I  GY  A+++AV  ++ IA   +      L DL  L +   T +NSK++        ++ V AVL    L+++D+N ++I ++   GG +ED+ L+ G+   K
Sbjct:    9 PVIVLKEGTDDSQGRG--QLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDL--LTKCASTAMNSKLIRSNSTFFTKMVVDAVLT---LDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKK 223          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 1.062e-31
Identity = 78/224 (34.82%), Postives = 131/224 (58.48%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      ++D + ++    +++ +K ++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 224          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.365e-31
Identity = 71/172 (41.28%), Postives = 113/172 (65.70%), Query Frame = 1
Query:  166 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV 675
            R  G   +K NV A  + A  ++TSLGP G+DKML    GDVTITNDGATIL+ +DV++  AK++V+L++ QD E+GDGTT VV++A +LL+ A++L+ R +HP  +  GY +A R A ++++   +   + +N L    L+    T ++SK++N      +++AV A++AV
Sbjct:    8 RTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQ---EHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAV 176          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.365e-31
Identity = 76/171 (44.44%), Postives = 113/171 (66.08%), Query Frame = 1
Query:  166 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV 675
            R  G D +  NV A +AV+ I++TSLGP G+DKML    GDVTITNDGATIL  ++V++  AK++VEL+  QD E+GDGTT VV++A  LL++A  L+   IHP  I  GY +A R + +++ E++  K E  L  + PL+    T+++SK+++      A + V+AVL+V
Sbjct:   14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVE-KLGKV-PLINCAKTSMSSKLISGDSDFFANLVVEAVLSV 182          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.089e-31
Identity = 74/213 (34.74%), Postives = 134/213 (62.91%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYG 768
            P +LL++  + S+  GL    +N++A  A+   +RT+LGP+GMDK++   +  VTI+NDGAT+++ +D+ +  A+ +V++++SQD E+GDGTT VV++AG  L+ A+  LE GIHP  I   +  A  +A + ++ ++   +   N  E L +   T++NSK++   K+  +++ V AV  + D    +++LD+I ++ + GG L D++ I G
Sbjct:    8 PIVLLKEGTDTSQ--GLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIK-PENMREFLEKCASTSMNSKLIASHKQFFSKMVVDAVQLLDD----NIDLDMIGIKKESGGGLGDSQFIAG 213          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.089e-31
Identity = 77/224 (34.38%), Postives = 131/224 (58.48%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLE--RKDVNL-DLIKVEGKVGGRLEDTELIYGITVDKDM 789
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+       ++ + ++    +++ +K+++R       IA+ AV  V   E  RK++++    +VE   GG +ED+ ++ G+ ++KD+
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 224          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.034e-31
Identity = 77/224 (34.38%), Postives = 124/224 (55.36%), Query Frame = 1
Query:  127 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDM 789
            +P ++L Q  ++    G   Q  N+ AGKA+A ++RT LGP+ M KML  P G + +TNDG  IL ++ V +  AK M+E++R+QD E+GDGTT V+V+AG +L  AE  L++ IHP  I   Y  A    V HL+      +  + D   +       + +K + +      +IA+ AV  V   E   + +D+    KVE   GG +E++ ++ G+ ++KD+
Sbjct:    6 QPILVLSQNTKRES--GRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQS-QLSIQLDVKDKAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGRLEVDIKRYAKVEKIPGGAIEESCVLKGVMINKDV 226          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 77/196 (39.29%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  166 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV------ADLERKDVNLDLIKVEGK 729
            R +G D +  NV+A  A+A I+++SLGP+G+DKML    GDVTITNDGATIL Q++V +  AK++VELS+ QD E+GDGTT VV++A  LL++A +L++  +HP  I  G+++A++ A  +   I +     + +L  E L+    T+++SK++       ++I V AV +V       D +    N+ +IK  G+
Sbjct:   11 RDQGQDVRTNNVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTY---IKEHLAISVEELGREALINAAKTSMSSKLIGPESNLFSQIVVDAVESVKMTNLMGDTKYPIKNVKIIKSHGQ 203          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.987e-31
Identity = 84/237 (35.44%), Postives = 134/237 (56.54%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND-LEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVA-------------DLERKDVNLDL---IKVEGKVGGRLEDTELIYGITVDKDM 789
            P ++L  + ++S   G  AQ  N+ A +AVA I+R++LGP+ M KML  P G + ITNDG  IL ++DV +  AK M+ELSR+ D E+GDGTT V+++AG +L  AE  +   IHP  I  GY  A + A+   E  A   +   ++ ++ LVQ+C   + +K  +R    + ++A+KAVL V+             D+  + + +D+    KVE   GG + D  ++ G+  +KD+
Sbjct:    8 PIMVLNSKTQRST--GRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSERVKSLVQSC---IGAKFSSRWNDIMIDMALKAVLTVSRESRTPSFTPEANDVYAQKMEVDIKRYAKVEKIPGGEISDCAVLSGVMFNKDV 239          
The following BLAST results are available for this feature:
BLAST of CX671364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
TCPG_MACFA6.224e-3235.27T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPH_SCHPO8.128e-3236.49Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPG_HUMAN1.062e-3134.82T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPA_SCHMA2.365e-3141.28T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_ARATH2.365e-3144.44T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPH_DICDI3.089e-3134.74T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPG_BOVIN3.089e-3134.38T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPG_DROME4.034e-3134.38T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPA_TETPY5.269e-3139.29T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPG_THAWE8.987e-3135.44T-complex protein 1 subunit gamma OS=Thalassiosira... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671364 ID=CX671364; Name=CX671364; organism=Citrus sinensis; type=EST; length=790bp
ACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTTGTGAAGAGAAG
TGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGGATAGGAGAAAA
TGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATATTATTAAGGCAG
CAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAGAAAGCCAACGT
TTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTCCCTCGGACCCA
AAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACA
AATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGC
AAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATG
GTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAG
AAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGA
AATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGT
TTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACT
ACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGAT
TGCTGTCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCA
ATTTAGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGAC
ACTGAGCTAATATATGGAATTACTGTTGACAAGGATATGA
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