CX671364

Overview
NameCX671364
Unique NameCX671364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 82/206 (39.81%), Postives = 127/206 (61.65%), Query Frame = 1
Query:  184 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            A+ A +SA     AV  +++++LGPKGMDK+LQS   +   +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V++  LL +AEKL+++  IHP  I EGY +AS  A++ L + A           E L+    TTL+SK++++ K   AE+A  A+L +    +   NL+ I++   +GG+L D+ L  G  + K
Sbjct:   15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KGSTNLEHIQIIKILGGKLSDSFLDEGFILAK 216          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 74/194 (38.14%), Postives = 116/194 (59.79%), Query Frame = 1
Query:  166 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVN------LDLIKVEGK 729
            ++ G D +  NV A  A+A ++++SLGP G+DKML    GDVT+TNDGATIL  +DV++   K++VEL++ QD E+GDGTT VV++A  LL +A +L++  IHP  I  GY +A R AV+ +  +       L   E L+    T+++SK++       + +AV A+L+V     K         ++++K  GK
Sbjct:   16 KISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGK-ESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGK 208          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.415e-30
Identity = 85/236 (36.02%), Postives = 141/236 (59.75%), Query Frame = 1
Query:  130 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQ-AEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND--LEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDV--------NLDL-----IKVEGKVGGRLEDTELIYGITVDKDM 789
            P + +   +E  R  G  AQ +N++A KAVA ++RT LGPK M KML  P G + +TNDG  IL ++DV +  AK M+ELSR+QD E+GDGTT V+++AG +L Q A  L+E+ IHP+ I +  + A   A+E ++++++  +   ND  ++ L+Q    ++ +K V     ++ E+A+ AV  V    RKD+        N ++     ++VE   GG + D+ ++ G+ ++KD+
Sbjct:    4 PVVFMNASQE--RTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVE-NDAAMKKLIQ---ASIGTKYVIHWSEKMCELALDAVKTV----RKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDV 229          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.415e-30
Identity = 79/195 (40.51%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  214 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++   K    ++AV+AVL +    +   NL+ I V  K+GG L D+ L  G  +DK
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGGSLADSYLDEGFLLDK 222          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.460e-30
Identity = 78/195 (40.00%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  214 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++   K    ++AV+AVL +    +   NL+ I +  K+GG L D+ L  G  +DK
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHIIKKLGGSLADSYLDEGFLLDK 222          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 4.460e-30
Identity = 78/195 (40.00%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  214 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G +++   + L+    TTL+SK++   K    ++AV+AVL +    +   NL+ I +  K+GG L D+ L  G  +DK
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHIIKKLGGSLADSYLDEGFLLDK 222          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 74/204 (36.27%), Postives = 129/204 (63.24%), Query Frame = 1
Query:  193 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER----IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNL---DLIKVEGKVGGRLEDTELIYGITVDK 783
            +N++A +++  I++T+LGP+GMDK+++   G  TI+NDGATIL  +D+ +  AK +V+++++QD E+GDGTT V ++AG LL++++  +E G+HP  + +GY+ A ++A+  L+     +A K +      E L++   T+LNSK++   K   +E+ V+AV      E  D NL   DLI ++   GG + D+ L+ G+   K
Sbjct:   24 SNINAVQSIVEIVKTTLGPRGMDKLIEGNRG-ATISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEALKLALTFLQENSYSVADKSDG--EKREMLLKCAQTSLNSKLLAHYKEFFSEMVVQAV------ETLDTNLLDKDLIGIKMVTGGSVTDSVLVKGVAFKK 218          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 7.608e-30
Identity = 79/195 (40.51%), Postives = 121/195 (62.05%), Query Frame = 1
Query:  214 AVARILRTSLGPKGMDKMLQSP--DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL---EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            A+  +++++LGPKGMDK+L S   D  + +TNDGATIL+ + VDN  AK++V++SR QD E+GDGTT V V+A  LL +AE L+ + IHP  I  G+  A++ A E L  ++   + G ++    + L+    TTL+SK++   K    ++AV+AVL +    +   NL+ I V  K+GG L D+ L  G  +DK
Sbjct:   34 AIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGGSLADSYLDEGFLLDK 222          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.298e-29
Identity = 80/213 (37.56%), Postives = 125/213 (58.69%), Query Frame = 1
Query:  154 EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDG--DVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFG-LNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK 783
            +  S  RG  A+ ++     A+  +++T+LGPKGMDK+L S     ++ ITNDGATIL ++ +DN  AK++V++SR+QD E+GDGTT V V+AG LL + E+L+++ +HP  I  G+ +A   A   L+   Q      +   E L+    TTL+SK+++  K   A + V AVL +      + NLD I +  K GG L ++ L  G  ++K
Sbjct:   13 QNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTTLSSKILHTEKDHFANMVVDAVLRL----NGNTNLDNIHIIKKSGGSLRESYLDEGFILEK 221          
BLAST of CX671364 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.298e-29
Identity = 73/195 (37.44%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  166 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK-DVN-----LDLIKVEGK 729
            R+ G + +  NV A  A+A I++TS GP G+DKML    G + +TNDGATIL+++D+++  AK++V+LS  QD E+GDGTT VV++A  LL++A +L+ R +HP  I  G+ +A   A++++ E +A K E    D   +V    T+++SK +N      ++I ++A+  V  ++ K DV      ++++K  GK
Sbjct:   12 RISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDF--IVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKGDVKYPINAINILKAHGK 204          
The following BLAST results are available for this feature:
BLAST of CX671364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
TCPB_YEAST1.533e-3039.81T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPA_SCHPO2.002e-3038.14T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPG_YEAST3.415e-3036.02T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPB_RAT3.415e-3040.51T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MACFA4.460e-3040.00T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN4.460e-3040.00T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPH_TETPY5.825e-3036.27T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPB_MOUSE7.608e-3040.51T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_DICDI1.298e-2937.56T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPA_DICDI1.298e-2937.44T-complex protein 1 subunit alpha OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671364 ID=CX671364; Name=CX671364; organism=Citrus sinensis; type=EST; length=790bp
ACTAAGCGAAAAAAGCACTGAAAGTTCTACACTCTTCTTGTGAAGAGAAG
TGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAAGGATAGGAGAAAA
TGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATATTATTAAGGCAG
CAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTCAGAAAGCCAACGT
TTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACCTCCCTCGGACCCA
AAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGACGTCACCATTACA
AATGATGGTGCCACAATCCTGGAGCAGATGGATGTTGACAATCAAATTGC
AAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTATGAAATTGGTGATG
GTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTTAGAGCAAGCTGAG
AAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTGCAGAGGGCTATGA
AATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGTATAGCTCAGAAGT
TTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCAAACTTGCATGACT
ACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCAGATTGGCTGAGAT
TGCTGTCAAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGGATGTCA
ATTTAGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGAC
ACTGAGCTAATATATGGAATTACTGTTGACAAGGATATGA
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