CX671363

Overview
NameCX671363
Unique NameCX671363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.511e-37
Identity = 93/250 (37.20%), Postives = 141/250 (56.40%), Query Frame = -3
Query:  135 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 884
            V +  +VGA  V    G DD A H L    + AVR     +L+ +A ATGGR+V    ++  + LG AG V +K  G   D  +++E   ++++VT+ +RGG + +++E +R+I D+L V R  + +  ++ GGGA E   S+ +   AD   G EQ A+ AFA+ALD IP  LAEN+GL PI++L  ++++         G+D       DM E+ V E L  K Q I  AT+   MIL+IDDVI+  +
Sbjct:  278 VDQLVEVGADAVFVGDGIDDMAQHYLAKEGILAVRRAKSSDLKRLARATGGRVVSSLDDIEADDLGFAGSVGQKDVGG--DERIFVEDVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRH-DGGEFAAGLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIAAGD 524          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.313e-36
Identity = 96/247 (38.87%), Postives = 140/247 (56.68%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V      GA +V  Q G DD A H L    + AVR V   ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++  GGA EI  +I+VD  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID       DM E+ +   L   +Q I  A   + MIL+IDDVI+
Sbjct:  280 VDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEIVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAISVDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEILVKVISEH-KNKGLGIGIDVFAGEPADMLERGIIAPLRVTKQAIKSARAAI-MILRIDDVIA 522          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.239e-36
Identity = 88/253 (34.78%), Postives = 142/253 (56.13%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V++ K  G  +++ Q         D A H L    +  V+ +   ++E I    G + V    + TP+ LG A L  E S   +  ++  I  C +  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  287 VKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVSLNGS-GKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.239e-36
Identity = 89/253 (35.18%), Postives = 143/253 (56.52%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V++ K  G  +++ Q         D A H L    +  V+ +   ++E I    G + V    + T + LG A L  E S   +  +++ I  CA+  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y IRAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  290 VKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGS-GKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVN 540          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.514e-36
Identity = 87/253 (34.39%), Postives = 143/253 (56.52%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V++ K  G  +++ Q         D A H L    +  ++ +   ++E I    G + V    + T + LG A L  E +   +  ++L I  CA+  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  287 VKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 6.514e-36
Identity = 87/253 (34.39%), Postives = 143/253 (56.52%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V++ K  G  +++ Q         D A H L    +  ++ +   ++E I    G + V    + T + LG A L  E +   +  ++L I  CA+  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  287 VKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.451e-35
Identity = 88/253 (34.78%), Postives = 141/253 (55.73%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V++ K  G  +++ Q         D A H L    +  V+ V   ++E I    G + V    + T + LG A L  E S   +  ++  I  C +  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  287 VKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDVEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGS-GKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.233e-35
Identity = 87/253 (34.39%), Postives = 143/253 (56.52%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V++ K  G  ++  Q         D A H L    +  V+ +   ++E I    G + +      TPE LG A L  E S   +  +++ I  CA+  + V+I +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RA++DAL+ IP  LAEN+GL PI T++ ++N+   + +   GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  284 VKQIKKAGCNVLFIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPIAHIDHFTPEMLGTAELAEEVSLDGS-GKLVKITGCASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRH-AQGDKMAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVN 534          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.229e-34
Identity = 91/247 (36.84%), Postives = 136/247 (55.06%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V K K VGA +VI Q G DD A H L    + AVR V   +++ +A ATG  IV    E++   LG A  V +   G  +D M ++  C N +AV+I +RG  + +++E +RSI D+L V  + + + +   GGGA     +  + + A +  G +Q AI  FADA++ IP ALAEN+GL PI+ L  ++ +  +  N   GI+       DM +  V E +   +Q I  AT+   MIL+IDDVI+
Sbjct:  278 VDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG--EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 521          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.229e-34
Identity = 87/250 (34.80%), Postives = 134/250 (53.60%), Query Frame = -3
Query:  135 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 884
            V   KD GA +V    G DD A H L    + AVR     +   ++ ATG   V    ++    LG AG V +K  G   D  +++E    +++VT+ +RGG + +++E +R+I D+L V R  + +  ++ GGGA E   ++ +   AD   G EQ A+ AFADAL+ IP  LAEN+G  PI++L  +++Q     +   G+D  +    DM  + + E L  K Q I  AT+   MIL+IDDVI+  +
Sbjct:  277 VDALKDAGANVVFADSGIDDMAQHYLAKEGILAVRRAKSDDFTRLSRATGATPVSNVNDIEAADLGAAGSVAQKDIGG--DERIFVEDVEEAKSVTLILRGGTEHVVDEVERAIEDSLGVVRVTLEDGQVMPGGGAPETELAMQLRDFADSVGGREQLAVEAFADALEVIPRTLAENAGHDPIDSLVDLRSQH-DGGDTEAGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVIAAGD 523          
The following BLAST results are available for this feature:
BLAST of CX671363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS1_HALVO4.511e-3737.20Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THSA_THEK81.313e-3638.87Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPD_RAT2.239e-3634.78T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_BOVIN2.239e-3635.18T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_PONAB6.514e-3634.39T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN6.514e-3634.39T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_MOUSE1.451e-3534.78T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_TAKRU3.233e-3534.39T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
THSB_THEAC1.229e-3436.84Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_HALSA1.229e-3434.80Thermosome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671363 ID=CX671363; Name=CX671363; organism=Citrus sinensis; type=EST; length=886bp
AAAAACCAACCCATAACCATTAAAGTCAGTCGTTATCAAGTGGACAGGGT
CGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAGCAAAAT
CAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGGGAAATG
ACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAGAAGAAT
CTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCACGCATGT
CATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTATTCTCC
CTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTGGAGACC
ACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTGCAAATG
CCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCTGCATCT
ACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACACAATAGA
ATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTATGCTCC
GCTTGGTCTCCTCTATCATCATTTTGTTACCTCCACGGATAAAAATGGTT
ACAGCCCTAGAATTTGCACAGTGTTCAATGTACAGCATTCTATCTTGTGT
AGTACCAAAAGACTTTTCTCGAACCAAACCAGCCTTTCCAAGTTTTTCTG
GTGTCAACTCCTGAAACCTTGGAACAATTCTTCCACCTGTGGCTATGGCA
ATCAGCTCCAATTCTACACCACCAACCCAGCGGACAGCAGGCAGGTTCCT
GTGCATTAATAAGTGATTAGCCTCATCATCGAAACCCCATTGACAGATGA
CCAAGGTAGCACCAACATCCTTGCACTTTTGAACCA
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