CX671363

Overview
NameCX671363
Unique NameCX671363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:266..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.398e-30
Identity = 84/250 (33.60%), Postives = 133/250 (53.20%), Query Frame = -3
Query:  144 QKCKDV---GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 881
            Q C+D+      +VI + G  D A H L+  N+ AVR V   +   IA A G RI  R  EL  E +G  AGL   K  G   +   +I  C + +A TI +RG +K ++ E +R++ DA+ V RN++ +  +V GGGA+E++ +  +   +    GVEQ+  RA A AL+ IP  L +N G   I  L++++ +  +E     G+D       DM+E  ++E L  K Q    A +   ++L+IDD++S
Sbjct:  276 QVCEDIIRLKPDVVITEKGISDLAQHYLVKANITAVRRVRKTDNNRIARACGARIASRTDELREEDVGTGAGLFEIKKIG--DEYFTFITDCKDPKACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKHTQEGCQTWGVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAILLLRIDDIVS 523          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.976e-30
Identity = 86/248 (34.68%), Postives = 138/248 (55.65%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND-MREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V K K +G  L I Q   D+ A++L+    + A++ V   ++EL++ ATG +I    ++     LG+A LV  ++ G  +++ L+I+    ++AVT+ I+G N M+ +E +RS++DA    RNL+    IV GGGA E   +  +   A + PG EQ A  AFADAL+     L+E +G+ PI  L+ ++++       N GID       D M E  V ++L  K+Q +  AT+    ILKIDD+I+
Sbjct:  274 VDKIKAMGVKLFITQKDIDEVASYLMGKSGIIALKNVKRSDIELLSRATGAKIASSMKDANESDLGEAKLVEVRNLG--KNKYLFIQS-DKAKAVTVIIKGSNNMVTDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRENAGKVPGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKH-ANGLKNAGIDIVKARIYDNMLELKVIDSLKVKEQVLKSATEAATAILKIDDMIA 517          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.976e-30
Identity = 79/226 (34.96%), Postives = 123/226 (54.42%), Query Frame = -3
Query:  147 ANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 821
            A H L    +  ++ +   ++E  +   G R V        + LG A LV E   G    +++ +    N   AV+I +RG NK+++EE  RSIHDALCV R L++  +++ GGGA E+  ++ +   A    G  QY  RAFADAL+ IP  LAEN+GL PI T++ ++N      N + G++       DM E++V + L+     I  A++ V+ ILKIDD++
Sbjct:  313 ALHFLAKMKIMCIKDIEREDIEFYSRILGCRPVASVDHFNADALGYADLVEEIPTGG-DGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNH-ANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 9.111e-30
Identity = 81/244 (33.20%), Postives = 132/244 (54.10%), Query Frame = -3
Query:  150 KCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 878
            KC  +     I +   +D A H L   N+  V+ +   E+E ++   G + +   +  T ++LG A LV E  S G+   R+  I +      V++ IRG N M+I+ET+RS+HDALCV R L++   ++ GGGA EI  S  +   A    GV+ +  + FA AL+ IP  LAEN+GL  I+ ++ ++++       N GI     GT +  E+++ + ++     I LA++ VK IL+IDD+
Sbjct:  282 KCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLGSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKH-ENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.190e-29
Identity = 79/242 (32.64%), Postives = 133/242 (54.96%), Query Frame = -3
Query:  144 VGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 866
            V  TLVI + G  D A H L+      +R V   +   IA  TG  IV R ++L    +G   GL + +  G   +   ++++C   +A TI +RGG+K ++ E  R++ DA+ VARN++ + S+  GGGA E+A S+ +   A +  G++Q+  +A ADA++ IP  L +N+G  PI  LS ++ +   + N   GID +     DM    ++E  + KQQ +  A +   ++L++DD++S
Sbjct:  290 VRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIG--DEYFSFLDNCKEPKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKH-AQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVS 528          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.190e-29
Identity = 78/244 (31.97%), Postives = 133/244 (54.51%), Query Frame = -3
Query:  150 KCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 878
            KC  +     I +   +D A H L    +  ++ +   E+E ++ + G + +   +  T ++LG A LV E  S GT   +   ++       V++ IRG N M+++ET+RS+HDALCV R L++   ++ GGGA EI  S  ++  +    GVE Y  + FA AL+ IP  LAEN+GL  I+ ++ ++++     + N GI     GT +  E+++ + ++     I LA++ VK IL+IDD+
Sbjct:  283 KCNVLLIQKSILRDAVNDLALHFLAKLGIMVIKDIEREEIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVKFSGVKGVNAKPTVSVIIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQEFAQALEVIPTTLAENAGLNSIKVITELRSRH-ENGDVNEGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 525          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.554e-29
Identity = 74/251 (29.48%), Postives = 127/251 (50.60%), Query Frame = -3
Query:  135 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIE-HCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 884
            VQ+  D GA +V CQ G DD A H L    + AVR     ++E +       +V      +   +    + R+     + D + Y+E     +  VT+ +RG    +++E +R + DAL V+   + +  ++ GGGA E+  +  +   AD   G EQ A+ AFAD+L+ +P  LAEN+GL  I+TL  +++    +++ + G++       D  E  V E    K+Q +  A++   ++LKIDD+IS  +
Sbjct:  284 VQQIADTGANVVFCQKGIDDMAQHYLAKEGILAVRRTKKSDIEFLTNVLDASVVTDLDAASEADVVAGSVTRD-----SDDELFYVEGESEQAHGVTLLLRGSTDHVVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIISAGD 529          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.462e-29
Identity = 79/240 (32.92%), Postives = 130/240 (54.17%), Query Frame = -3
Query:  144 LVICQWGFDDEANH-LLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNP-NCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 854
            +VI + G  D A H LL + N   +R +   +   IA  TG  I  R +EL    +G K GL   K  G   +   ++  C N +A +I +RG +K ++ E +R++HDAL VARN++ N  +V GGGA E+  +  +   + +  G++Q+  +A A AL+ IP  LA+N G   +  ++ ++ +   +      GID N     DMRE NV++ +  KQQ +  + +   M+L+IDD++S
Sbjct:  290 VVITEKGVSDTAQHFLLKYGNCTVIRRIRKTDNNRIARVTGATIANRPEELQESDVGTKCGLFEIKKIG--DEYFSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVS 527          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.522e-29
Identity = 79/250 (31.60%), Postives = 137/250 (54.80%), Query Frame = -3
Query:  150 QKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS-RAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 881
            +K K  GA +++ Q        +D A H L    +  ++ +   E+E I  +TG + +   +    +KLG A LV E S  ++ ++++      N+ + V+I  RG N + +EE +RS+HDALCV R L++  +++ GGG+ EI  +  +   A +  G E   IRAF++AL+ IP+ LAEN+GL  I+ ++ ++++         GI+       ++ E+NV + L+     I LA +  KMI+KIDD+
Sbjct:  277 KKIKKAGANVILIQKSILRDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFAEDKLGHADLVEETS--SSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.713e-29
Identity = 85/248 (34.27%), Postives = 137/248 (55.24%), Query Frame = -3
Query:  144 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTND-MREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 884
            V K K +G  L I Q   D+ A++L+    + A++ V   ++EL++ ATG +I    ++     LG+A LV  ++ G  +++ L+I+    ++AVT+ I+G N M+ +E +RS++DA    RNL+    IV GGGA E   +  +   A +  G EQ A  AFADAL+     L+E +G+ PI  L+ ++++       N GID       D M E  V ++L  K+Q +  AT+    ILKIDD+I+
Sbjct:  274 VDKIKAMGVKLFITQKDIDEIASYLMGKNGIMALKNVKRSDIELLSRATGAKIASSMKDANESDLGEAKLVEVRNLG--KNKYLFIQS-DKAKAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKH-ATGLKNAGIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMIA 517          
The following BLAST results are available for this feature:
BLAST of CX671363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPG_XENLA2.398e-3033.60T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
THSG_SULSH6.976e-3034.68Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPD_CAEEL6.976e-3034.96T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPD_YEAST9.111e-3033.20T-complex protein 1 subunit delta OS=Saccharomyces... [more]
TCPG_YEAST1.190e-2932.64T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPD_CANGA1.190e-2931.97T-complex protein 1 subunit delta OS=Candida glabr... [more]
THSB_HALSA1.554e-2929.48Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPG_OXYGR3.462e-2932.92T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPD_SCHPO4.522e-2931.60T-complex protein 1 subunit delta OS=Schizosacchar... [more]
THSG_SULSO7.713e-2934.27Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671363 ID=CX671363; Name=CX671363; organism=Citrus sinensis; type=EST; length=886bp
AAAAACCAACCCATAACCATTAAAGTCAGTCGTTATCAAGTGGACAGGGT
CGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAGCAAAAT
CAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGGGAAATG
ACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAGAAGAAT
CTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCACGCATGT
CATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTATTCTCC
CTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTGGAGACC
ACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTGCAAATG
CCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCTGCATCT
ACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACACAATAGA
ATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTATGCTCC
GCTTGGTCTCCTCTATCATCATTTTGTTACCTCCACGGATAAAAATGGTT
ACAGCCCTAGAATTTGCACAGTGTTCAATGTACAGCATTCTATCTTGTGT
AGTACCAAAAGACTTTTCTCGAACCAAACCAGCCTTTCCAAGTTTTTCTG
GTGTCAACTCCTGAAACCTTGGAACAATTCTTCCACCTGTGGCTATGGCA
ATCAGCTCCAATTCTACACCACCAACCCAGCGGACAGCAGGCAGGTTCCT
GTGCATTAATAAGTGATTAGCCTCATCATCGAAACCCCATTGACAGATGA
CCAAGGTAGCACCAACATCCTTGCACTTTTGAACCA
back to top