CX671363

Overview
NameCX671363
Unique NameCX671363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:266..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 76/236 (32.20%), Postives = 122/236 (51.69%), Query Frame = -3
Query:  147 LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 854
            +VI Q G D  +   L    + A+R      +E + +A GG  +   ++LTP+ LG AGLV E + G  +++  +IE C N R+VT+ IRG NK  + + K ++ D L   +N I +  ++ G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG  P ETL  V+ +   E+    G+D N           +++    K+Q +   T +   IL +D+++
Sbjct:  289 IVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTPDCLGHAGLVYEYTLG--EEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQETLVKVQAEH-AESGQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDEIM 521          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPQ_CHICK (T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 80/249 (32.13%), Postives = 125/249 (50.20%), Query Frame = -3
Query:  147 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAV-TIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCG--IDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 884
            V+   D GA +V+      D A H     NL  VR     +L  +    G   +PR    T E++G    V     G TQ  ++  +H     A+ TI IRG    ++++ +R++ D +   + L R+  +V GGGA EI  +  + +  +  PG++QYAI+ FA+A +AIP ALAENSG++  E +S +     +E N N G  I+       DM E  + +T +GK   I LAT     +L++D +I
Sbjct:  280 VKAIADSGANVVVTGGKVADMALHYANKYNLMIVRLNSKWDLRRLCKTVGATALPRLTPPTLEEMGHCNSVYLSEVGDTQ--VVVFKHEKEDGAISTILIRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLDQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGFDIEAEAAAVKDMLEAGILDTYLGKYWGIKLATNAAVTVLRVDQII 525          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 85/254 (33.46%), Postives = 127/254 (50.00%), Query Frame = -3
Query:  135 CKDVGAT---LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNC---GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 875
            C D+ A    LV  + G  D A H L+   + A+R +   +   IA A G  IV R +ELT + +G  AGL   K  G   +   ++  C   +A TI +RG +K ++ ET+R++ DAL VARNL+    +V GGGA E+A S  +     + P        A A AL+ IP  LA+N G   I  L+A++ +            GID       DM  +N++E L  K Q    A +   ++L+IDD++S S+
Sbjct:  281 CADIIAVKPDLVFTEKGVSDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKIG--DEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRKQVKGP------YTAVAHALEIIPRTLAQNCGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVSGSK 526          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.100e-26
Identity = 82/265 (30.94%), Postives = 130/265 (49.06%), Query Frame = -3
Query:  147 QKCKDV---GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEK--------LGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAEN---------SGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 881
            ++CK +   GA ++I   G DD A   L+   +  +R V   +L  +A ATGG IV      TPE         LG+   V E++ G      ++ +    +   +I IRG N+ M++E  RS+HD+LCV +  + +  +V GGGA EIA SI ++  A      EQ A+  F +AL+ IP  LA N         S L+ +   S   +   ++   NCG+D +     +  +  V E ++ K + +  AT+    IL+IDD+I
Sbjct:  273 ERCKKIIEAGANVIITSAGMDDVATKYLVEAGVMGLRRVDKHDLRRLAKATGGTIVTTLA--TPEGDEVFEASYLGECAEVYEEAVGDND--CIFFKGTKRANCASIIIRGANEFMVDEVDRSLHDSLCVVKRTLESGYVVPGGGAVEIALSIKLEDFARTLGTKEQTAVAEFCEALNIIPKVLAANAAQDATELVSKLRALHAASQSSDDPAKKELKNCGLDLSLGKVRNNVKAGVLEPMVSKIKSLRFATEAAITILRIDDMI 533          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 77/236 (32.63%), Postives = 123/236 (52.12%), Query Frame = -3
Query:  147 LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 854
            +VI Q G D  +   L    + A+R      +E + +A GG  +  F +L+P++LG AGLV E + G  +++  +IE C N R+VT+ I+G NK  + + K ++ D L   RN I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  ++ +   E+    G+D N        E  V++    K+Q +   T +   IL +D+++
Sbjct:  290 VVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDQLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVRNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEH-SESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 65/205 (31.71%), Postives = 111/205 (54.15%), Query Frame = -3
Query:  147 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 761
            +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    +++   VYGGG +E+  + AV   A R PG E  A+ +FA AL  +P  +A+N+G    + ++ ++     E     G+D  +    DM    + E+   K+Q +L A +  ++IL++D++I
Sbjct:  320 VERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGRITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNII 521          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 65/205 (31.71%), Postives = 113/205 (55.12%), Query Frame = -3
Query:  147 LELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 761
            +E +A+ TGG I   F      KLG   L+ E   G  +D++++    A   A TI +RG  + +++E +RS+HDALCV    +++   VYGGG +E+  + AV   A+R PG E  A+ +FA AL  +P  +A+N+G    + ++ ++     E +   G+D  +    DM    + E+   K+Q +L A +  ++IL++D++I
Sbjct:  320 VERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGHITAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNII 521          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.583e-26
Identity = 81/263 (30.80%), Postives = 134/263 (50.95%), Query Frame = -3
Query:  135 VQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELT------PEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVK-------NQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 884
            +QK  + GA +++   G DD      +  N  AVR    V+L+ +A ATGG+++    ++       P KLG A  V ++      D ++ +       + +I +RG N   ++E +RS+HDAL V + ++ +  IV G GA E A SI ++  A      EQ AI  FA A+ +IP  LA N+G+   E ++ ++       ++  + +N   G+D N+    D +E  VFE L+ K + +  AT+    IL+IDD+I   E
Sbjct:  272 IQKILNAGANVILTTGGIDDLCMKYFVEVNAMAVRRCKKVDLKNMAKATGGQLIVSLADMEGDEVFDPTKLGNAEEVSQERI--CDDELIILRGPKVHPSASIILRGANDFYVDEMERSLHDALLVVKRVLESKRIVPGAGACETAVSIYLENYALTLSSREQLAIAEFARAMLSIPKQLAVNAGVDSTELVARLRSCHNSSQSKPDQAHNKWWGLDLNNQYVADCKEIGVFEPLVSKIKSLKFATEAAITILRIDDLIKLKE 532          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.679e-26
Identity = 74/225 (32.89%), Postives = 121/225 (53.78%), Query Frame = -3
Query:  150 ANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 821
            A H L   N+  ++ +   ++E I+ +TG + V   +  T +KLG   LV E +S G+   R    E    S  V+I +RG N ++I+ET+RS+HDALCV R+L R  ++V GGGA E+  +  +   +    G        F++A+  IP  LAEN+GL P+  ++ ++ +   +   N GI     GT+ M E++V +  +     I LA +  K +L+IDD+
Sbjct:  304 ALHFLAKLNIMVIKDIERDDIEFISRSTGAKPVADIEAFTEDKLGSCDLVEEVESSGSKTVRFSSRE---GSNTVSILVRGANDLVIDETERSLHDALCVLRSLFRVPALVPGGGACEVQVAQVIGKESRAMDGASAICYEEFSNAMLVIPTTLAENAGLNPVNVVTELRVRH-EKGEVNAGISVRR-GTSIMVEEHVIQPALVTTSAITLAAECAKGLLRIDDI 523          
BLAST of CX671363 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 118.242 bits (295), Expect = 6.111e-26
Identity = 75/236 (31.78%), Postives = 125/236 (52.97%), Query Frame = -3
Query:  147 LVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 854
            +VI Q G D  +   L    + A+R      +E +++A GG  V  F++LT + LG AGLV E + G  +++  +IE C N  +VT+ ++G NK  + + K +I D L   +N I +  +V G GA E+A + A+    +   G  +  ++AFADAL  IP  LA+N+G  P ETL  V+ + + E+    G+D N        +  V++    K+Q +   T +   IL +D+++
Sbjct:  290 VVINQKGIDPFSLDSLAKHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLG--EEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHV-ESKQLVGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
The following BLAST results are available for this feature:
BLAST of CX671363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPZ_CHICK2.100e-2632.20T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPQ_CHICK2.100e-2632.13T-complex protein 1 subunit theta OS=Gallus gallus... [more]
TCPG_DROME2.100e-2633.46T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPA_TETPY2.100e-2630.94T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPZ_PONAB2.743e-2632.63T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPB_RAT2.743e-2631.71T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MOUSE2.743e-2631.71T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPA_SCHMA3.583e-2630.80T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPD_YARLI4.679e-2632.89T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
TCPW_HUMAN6.111e-2631.78T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F06-K12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671363 ID=CX671363; Name=CX671363; organism=Citrus sinensis; type=EST; length=886bp
AAAAACCAACCCATAACCATTAAAGTCAGTCGTTATCAAGTGGACAGGGT
CGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAGCAAAAT
CAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGGGAAATG
ACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAGAAGAAT
CTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCACGCATGT
CATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTATTCTCC
CTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTGGAGACC
ACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTGCAAATG
CCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCTGCATCT
ACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACACAATAGA
ATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTATGCTCC
GCTTGGTCTCCTCTATCATCATTTTGTTACCTCCACGGATAAAAATGGTT
ACAGCCCTAGAATTTGCACAGTGTTCAATGTACAGCATTCTATCTTGTGT
AGTACCAAAAGACTTTTCTCGAACCAAACCAGCCTTTCCAAGTTTTTCTG
GTGTCAACTCCTGAAACCTTGGAACAATTCTTCCACCTGTGGCTATGGCA
ATCAGCTCCAATTCTACACCACCAACCCAGCGGACAGCAGGCAGGTTCCT
GTGCATTAATAAGTGATTAGCCTCATCATCGAAACCCCATTGACAGATGA
CCAAGGTAGCACCAACATCCTTGCACTTTTGAACCA
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