CX671360

Overview
NameCX671360
Unique NameCX671360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671360_ssr281 microsatellite CX671360_ssr281:281..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig174 contig Csv1_Contig174:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOPL_HUMAN (Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEES+   ++I+D+  +  +  + ++YT  A   +++A +LL  A+KY ++ LK  CE+ L S L+ +N       A  H+A QL   A+  I
Sbjct:  220 ARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: BAT43_CAEEL (BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 37/121 (30.58%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEYRE 777
            +RS VF AM ++ M+ES +    + D+  + +R  + Y+YT +    EQ+A  L+  A+KYQ+  LK  CE+ L  +L  DN+ +    A  ++A QL   +++ I  N +++   E + +
Sbjct:  291 ARSRVFSAMFEHHMQESDTNMTTVDDIEPEVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRLKVMCEQALCYQLTTDNASLTLMLADMYSASQLRAHSINFINVNANEVMDTEGWED 411          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: SPOPL_MOUSE (Speckle-type POZ protein-like OS=Mus musculus GN=Spopl PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RSPVF AM ++EMEE     ++I+D+  +  +  + ++YT +A   +++A +LL  A+KY ++ LK  CE+ L S L+ +N       A  H+A QL   A+  I
Sbjct:  220 ARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFI 325          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLI 732
            +RS VF AM ++EMEE +   + I+DV ++ L+  + ++YT +A   E++A DLL  A+KY ++ LK  CE+ L   L+ + +      A  H+A QL    +  I
Sbjct:  675 ARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFI 780          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: TDPZ2_MOUSE (TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 36/122 (29.51%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACL--DEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEYR 774
            +RSPVF+AM +++MEE  +   +I ++ +   +  ++++YT +A       +ACD+L  A+KY ++ LK  CE  L   L+ +N+      A  H+  QL   AL  I  +  +++K   ++
Sbjct:  208 ARSPVFRAMFEHQMEERLANCFEIQELDFQVFKEMMDFIYTGKAPTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTLIVADLHSTEQLKTRALHFIAVHASEVSKSSGWK 329          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: TDPZ3_MOUSE (TD and POZ domain-containing protein 3 OS=Mus musculus GN=Tdpoz3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.551e-11
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEA--CLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEYR 774
            +RSPVF+AM ++EM+ES    I+I D+  D  +  + ++YT +A       +ACD+L  A+KY +  LK  CE  L   L+  N+      A  ++  +L   AL  I  +  ++++  E++
Sbjct:  208 ARSPVFRAMFEHEMKESLKNPIEIMDLDLDVFKEMMGFIYTGKAPHLHSHSMACDVLPAADKYGLVGLKVLCEDVLCRNLSVKNAAHTLILAELNSTEKLKSQALDFIAIHACEVSETSEWK 329          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: KLH23_PONAB (Kelch-like protein 23 OS=Pongo abelii GN=KLHL23 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.551e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  421 SPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEYRE 777
            S  FKAM   +M+E     IK+S + +D L   VNY YT++  + E+    LLE A+  Q   +K  CE+FLV  L+ DN +  ++FA  H   +L + +  ++     ++ + EE+ E
Sbjct:   59 SNYFKAMFTADMKEKFKNKIKLSGIHHDILEGLVNYAYTSQIEITERNVQSLLEAADLLQFLSVKKACERFLVRHLDIDNCIGMHSFAEFHVCPELEKESRRILCSKFKEVWQQEEFLE 177          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: KLH23_HUMAN (Kelch-like protein 23 OS=Homo sapiens GN=KLHL23 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  421 SPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEYRE 777
            S  FKAM   +M+E     IK+S + +D L   VNY YT++  + ++    LLE A+  Q   +K  CE+FLV  L+ DN +  ++FA  H   +L + +  ++     ++ + EE+ E
Sbjct:   59 SNYFKAMFTADMKEKFKNKIKLSGIHHDILEGLVNYAYTSQIEITKRNVQSLLEAADLLQFLSVKKACERFLVRHLDIDNCIGMHSFAEFHVCPELEKESRRILCSKFKEVWQQEEFLE 177          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: KLH23_MOUSE (Kelch-like protein 23 OS=Mus musculus GN=Klhl23 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  421 SPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEYRE 777
            S  FKAM   +M+E     IK+S + +D L   VNY YT++  + ++    LLE A+  Q   +K  CE+FLV  L+ DN +  ++FA  H   +L + +  ++     ++ + EE+ E
Sbjct:   59 SNYFKAMFTADMKEKFKSKIKLSGIHHDILEGLVNYAYTSQIEITKRNVQSLLEAADLLQFLSVKKACEQFLVRHLDIDNCIGMHSFAEFHVCSELEKESRRILCSRFKEVWQQEEFLE 177          
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: KLH17_RAT (Kelch-like protein 17 OS=Rattus norvegicus GN=Klhl17 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEY 771
            S SP F AM  NEM ESR   + + D+   AL   V + YTAE  + E     LL  A   Q+  ++  C KFL+S+L+  N +    FA  H+   LL+AA   +  +   + K EE+
Sbjct:  110 SCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEF 228          
The following BLAST results are available for this feature:
BLAST of CX671360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SPOPL_HUMAN3.691e-1335.85Speckle-type POZ protein-like OS=Homo sapiens GN=S... [more]
BAT43_CAEEL1.832e-1230.58BTB and MATH domain-containing protein 43 OS=Caeno... [more]
SPOPL_MOUSE3.124e-1234.91Speckle-type POZ protein-like OS=Mus musculus GN=S... [more]
RDX_DROME6.960e-1234.91Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]
TDPZ2_MOUSE1.187e-1129.51TD and POZ domain-containing protein 2 OS=Mus musc... [more]
TDPZ3_MOUSE1.551e-1131.15TD and POZ domain-containing protein 3 OS=Mus musc... [more]
KLH23_PONAB1.551e-1132.77Kelch-like protein 23 OS=Pongo abelii GN=KLHL23 PE... [more]
KLH23_HUMAN4.512e-1131.93Kelch-like protein 23 OS=Homo sapiens GN=KLHL23 PE... [more]
KLH23_MOUSE5.892e-1131.93Kelch-like protein 23 OS=Mus musculus GN=Klhl23 PE... [more]
KLH17_RAT5.892e-1135.29Kelch-like protein 17 OS=Rattus norvegicus GN=Klhl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10F04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F04-K8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671360 ID=CX671360; Name=CX671360; organism=Citrus sinensis; type=EST; length=779bp
CCGAGACGGAAACTCCGAGGAGAAAAAAAGATGCGAGGTCGTCGGTGCCA
CTCGACTCGCCACCCAGACATGTCGGGTTCGGGTTCGGGTTCGGGTTTGG
AATCCGAAGCCGAATCTGAAACGATGCGTTGCATCTCCTGCAGGGAGGAG
TACGGGACCCGGGACGCGGGCACATGCAAGGAGTGTTACGAGGAGGCGAG
CGAGACGGAGGAGGAGCTGAAGCGAGAAATCGAAGATCTTAAAGCTAAAG
TCGCCTTTTTAAGGTTTTGGTCTCCACTCGATCATCATCATCATCATCAC
AGCAGTAGGTCCCACTGCGGACCTTGTTATACCGACGTCGTTTTGGTCGC
CGCCTCGGAATCCGGCCCTGCTGGCCCCGCCGTTCCCGTCCCCGCTCATA
AGGCCGTGTTGGTGAGTCGTTCTCCAGTGTTTAAAGCCATGCTAGATAAT
GAAATGGAAGAAAGTCGGAGTGGCACTATAAAGATCAGTGATGTATCATA
TGATGCCCTTCGTGCATTTGTCAATTATTTGTATACTGCAGAAGCTTGCC
TTGATGAGCAATTGGCCTGTGACCTTTTGGAGTTGGCTGAAAAATATCAG
GTGAAGCACCTTAAAGCATACTGTGAGAAGTTCCTGGTATCCAAACTGAA
TTGGGACAATTCTGTTGTGAACTATGCTTTTGCGCACCAGCACAATGCAN
AGCAGTTGCTTGAAGCAGCATTGTCATTGATCACGGACAACATGGACAAG
CTTACCAAGTGCGAGGAGTATAGGGAGCT
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