CX671360

Overview
NameCX671360
Unique NameCX671360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671360_ssr281 microsatellite CX671360_ssr281:281..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig174 contig Csv1_Contig174:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: KLH17_MOUSE (Kelch-like protein 17 OS=Mus musculus GN=Klhl17 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEY 771
            S SP F AM  NEM ESR   + + D+   AL   V + YTAE  + E     LL  A   Q+  ++  C KFL+S+L+  N +    FA  H+   LL+AA   +  +   + K EE+
Sbjct:  110 SCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADTHSCSDLLKAAHRYVLQHFVDVAKTEEF 228
[Close]
BLAST of CX671360 vs. ExPASy Swiss-Prot
Match: KLH17_HUMAN (Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:  415 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAXQLLEAALSLITDNMDKLTKCEEY 771
            S SP F AM  NEM ESR   + + D+   AL   V + YTAE  + E     LL  A   Q+  ++  C KFL+S+L+  N +    FA  H+   LL+AA   +  +   + K EE+
Sbjct:  112 SCSPYFHAMFTNEMSESRQTHVTLHDIDPQALDQLVQFAYTAEIVVGEGNVQTLLPAASLLQLNGVRDACCKFLLSQLDPSNCLGIRGFADAHSCSDLLKAAHRYVLQHFVDVAKTEEF 230
The following BLAST results are available for this feature:
BLAST of CX671360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
KLH17_MOUSE5.892e-1135.29Kelch-like protein 17 OS=Mus musculus GN=Klhl17 PE... [more]
KLH17_HUMAN5.892e-1135.29Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10F04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10F04-K8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671360 ID=CX671360; Name=CX671360; organism=Citrus sinensis; type=EST; length=779bp
CCGAGACGGAAACTCCGAGGAGAAAAAAAGATGCGAGGTCGTCGGTGCCA
CTCGACTCGCCACCCAGACATGTCGGGTTCGGGTTCGGGTTCGGGTTTGG
AATCCGAAGCCGAATCTGAAACGATGCGTTGCATCTCCTGCAGGGAGGAG
TACGGGACCCGGGACGCGGGCACATGCAAGGAGTGTTACGAGGAGGCGAG
CGAGACGGAGGAGGAGCTGAAGCGAGAAATCGAAGATCTTAAAGCTAAAG
TCGCCTTTTTAAGGTTTTGGTCTCCACTCGATCATCATCATCATCATCAC
AGCAGTAGGTCCCACTGCGGACCTTGTTATACCGACGTCGTTTTGGTCGC
CGCCTCGGAATCCGGCCCTGCTGGCCCCGCCGTTCCCGTCCCCGCTCATA
AGGCCGTGTTGGTGAGTCGTTCTCCAGTGTTTAAAGCCATGCTAGATAAT
GAAATGGAAGAAAGTCGGAGTGGCACTATAAAGATCAGTGATGTATCATA
TGATGCCCTTCGTGCATTTGTCAATTATTTGTATACTGCAGAAGCTTGCC
TTGATGAGCAATTGGCCTGTGACCTTTTGGAGTTGGCTGAAAAATATCAG
GTGAAGCACCTTAAAGCATACTGTGAGAAGTTCCTGGTATCCAAACTGAA
TTGGGACAATTCTGTTGTGAACTATGCTTTTGCGCACCAGCACAATGCAN
AGCAGTTGCTTGAAGCAGCATTGTCATTGATCACGGACAACATGGACAAG
CTTACCAAGTGCGAGGAGTATAGGGAGCT
back to top