CX043578

Overview
NameCX043578
Unique NameCX043578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.714e-71
Identity = 125/179 (69.83%), Postives = 149/179 (83.24%), Query Frame = -2
Query:  188 MASSMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 724
            MASS++S+A    A   + AQA+MVAPF GLKS  AFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.544e-71
Identity = 124/174 (71.26%), Postives = 151/174 (86.78%), Query Frame = -2
Query:  182 SATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 703
            S+TVAT +RA+ AQA+MVAPFTGLKS  AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.046e-71
Identity = 123/174 (70.69%), Postives = 151/174 (86.78%), Query Frame = -2
Query:  182 SATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 703
            S+TVAT +RA+ AQA+MVAPFTGLKS  AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.896e-71
Identity = 127/179 (70.95%), Postives = 149/179 (83.24%), Query Frame = -2
Query:  188 MASSMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 724
            MASSM++S   A   RA  AQ+SMVAPF GL+S  AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.896e-71
Identity = 127/177 (71.75%), Postives = 148/177 (83.62%), Query Frame = -2
Query:  188 SSMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 718
            +SM+S+A V    R + AQASMVAPFTGLKS  AFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP
Sbjct:    2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.031e-70
Identity = 121/174 (69.54%), Postives = 149/174 (85.63%), Query Frame = -2
Query:  182 SATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 703
            S++VAT +R + AQA+MVAPFTGLKS  AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++  L KE++YL+R  W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.347e-70
Identity = 124/176 (70.45%), Postives = 147/176 (83.52%), Query Frame = -2
Query:  188 SMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 715
            ++ISSA V T NRA + QA++  PFTGLKS   FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.684e-70
Identity = 125/179 (69.83%), Postives = 147/179 (82.12%), Query Frame = -2
Query:  188 MASSMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 724
            MASSM++S   A   R   AQ +MVAPF GL+S  AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.945e-69
Identity = 125/177 (70.62%), Postives = 149/177 (84.18%), Query Frame = -2
Query:  188 SSMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 718
            +S++S+A V TA+ A  AQA+MVAPF+GLKS  AFP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEINYL+  GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:    2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX043578 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.540e-69
Identity = 125/179 (69.83%), Postives = 148/179 (82.68%), Query Frame = -2
Query:  188 MASSMISSATVATANRASLAQASMVAPFTGLKSFFAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 724
            MASS    ++VATA RA+ AQASMVAPF GLKS  AFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of CX043578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS5_MESCR2.714e-7169.83Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR3.544e-7171.26Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_FLAPR6.046e-7170.69Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_LEMGI7.896e-7170.95Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_MESCR7.896e-7171.75Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HELAN1.031e-7069.54Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TRIRP1.347e-7070.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI6.684e-7069.83Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS_SILPR1.945e-6970.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG2.540e-6969.83Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A11-A22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043578 ID=CX043578; Name=CX043578; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGC
AACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATCGA
ATGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATGGG
TGGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGGCTTGGCAGCA
ATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATTCG
GACAAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAA
CCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCCAG
TAGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCACGGTACACCCA
TCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGATAA
GGTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGTAT
GAGAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACACCTTCATGCA
TTGGACTCTTCCGCCGTTGCTTGCAATGGAAGTAATGTCATTGTTGGTCT
TCTTGGTTGCTGGGAAAGCAAAAAAAGACTTGAGGCCGGTGAAGGGGGCG
ACCATGCTGGCCTGAGCAAGGCTGGCGCGGTTCGCGGTGGCAACGGTGGC
CGATGAGATCATTGAGGAAGCCATTGGTACTTGCCCT
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