FC871748

Overview
NameFC871748
Unique NameFC871748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 1
Query:  112 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            LVDE N  E    I GPPDT YEGG +   +  P  YP +PP V+F T+IWHPN+    G +C+ IL              ++W    T+                + P +   A +++   + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 1
Query:  154 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 513
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 39/136 (28.68%), Postives = 59/136 (43.38%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDD 480
            ++  +P    SAG   + N++EW  TI+GPP ++YEGG F   + F   YP  PP V F T I+H N+   G +C+ IL              + W P  T+              N   P     A ++   R++
Sbjct:   97 EITLDPPPNCSAGPKGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREE 218          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 39/138 (28.26%), Postives = 63/138 (45.65%), Query Frame = 1
Query:   97 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 510
            G +    D  +I  ++++I  P D LY+   F   ++ PS YP  PP V   T ++HPN+  +G VC++IL              + WMPV  +             PN + P N +AA+   D +  F+  V + +R
Sbjct:   94 GCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILR-------------QDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLR 217          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = 1
Query:  154 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 513
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 1
Query:  154 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 513
            + P ++ Y+GG F   +  P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     +D+++ KV   ++R
Sbjct:   69 VSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 1
Query:  154 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 513
            + P ++ Y+GG F   +  P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     +D+++ KV   ++R
Sbjct:   69 VSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 40/133 (30.08%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  118 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 513
            ++ + F+ +VT   P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   60 NKLHCFQLTVT---PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 182          
The following BLAST results are available for this feature:
BLAST of FC871748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
UBE2K_BOVIN7.299e-1130.71Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2F_RAT7.299e-1130.58NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBCD2_DROME7.299e-1128.68Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC12_DICDI7.299e-1128.26NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UB2FA_MOUSE7.299e-1130.58NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_XENTR9.533e-1129.75NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA9.533e-1129.75NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBE2F_HUMAN9.533e-1130.08NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871748 ID=FC871748; Name=FC871748; organism=Citrus sinensis; type=EST; length=752bp
TTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCT
CCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGT
TTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACA
ATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCAT
TATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTA
CAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATA
TCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAG
TGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTTGAGTATCA
TATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCT
GCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAGGCCG
CTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAGGCACTCTT
TTTTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTG
TGGGGGGAACTGGGTTCTGTGGGTACTTGGTCTTGTGTAGACTGGCATTT
TGAAGTTCTCTCAACCATCTCTCTCGTTTTCTCTGCATGGTCAAGTCACT
GTAACGACTGGGAACATCCATGTATTCAAAAGCGTTCTTTGGTTAGTTTT
AA
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