FC871748

Overview
NameFC871748
Unique NameFC871748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GPPD+ Y+GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL               +W P  TV             PN + P   + A+ ++  ++ + +
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GPPD+ Y+GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL               +W P  TV             PN + P   + A+ ++  ++ + +
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GPPD+ Y+GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL               +W P  TV             PN + P   + A+ ++  ++ + +
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GPP++ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   12 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 45/124 (36.29%), Postives = 60/124 (48.39%), Query Frame = 1
Query:  118 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            D  N+F+W  T+ GP DT+YE   +   + FPS+YP  PP VKFTT  WHPNV   G +C+ IL              E W   + V             PN+ SP N +AA  W   + ++KK
Sbjct:   55 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKK 164          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC871748 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   73 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKK 489
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
The following BLAST results are available for this feature:
BLAST of FC871748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
UB2D1_MOUSE6.164e-1832.37Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN6.164e-1832.37Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN6.164e-1832.37Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL1.373e-1733.09Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBE2C_SPISO1.794e-1736.29Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UB2D2_XENLA1.794e-1733.09Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.794e-1733.09Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.794e-1733.09Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.794e-1733.09Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.794e-1733.09Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871748 ID=FC871748; Name=FC871748; organism=Citrus sinensis; type=EST; length=752bp
TTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCT
CCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGT
TTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACA
ATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCAT
TATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTA
CAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATA
TCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAG
TGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTTGAGTATCA
TATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCT
GCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAGGCCG
CTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAGGCACTCTT
TTTTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTG
TGGGGGGAACTGGGTTCTGTGGGTACTTGGTCTTGTGTAGACTGGCATTT
TGAAGTTCTCTCAACCATCTCTCTCGTTTTCTCTGCATGGTCAAGTCACT
GTAACGACTGGGAACATCCATGTATTCAAAAGCGTTCTTTGGTTAGTTTT
AA
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