CX671290

Overview
NameCX671290
Unique NameCX671290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.753e-78
Identity = 141/221 (63.80%), Postives = 174/221 (78.73%), Query Frame = 3
Query:  159 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            + L  PL+  D E+ DII+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N  TGYIDYD+LE++A LF PKLI+AG S Y+R  DY R+RK+ ++  A ++ADMAHISGLV AGV
Sbjct:   20 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGV 240          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 3.595e-78
Identity = 140/215 (65.12%), Postives = 171/215 (79.53%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L   DPE+ ++++ EK RQ +GLELI SENF   + ++A+GS + NKYSEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K++SA SIFFE+MPY+LN  TG IDY+QL  +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA V
Sbjct:   49 LSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV 263          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.595e-78
Identity = 138/221 (62.44%), Postives = 174/221 (78.73%), Query Frame = 3
Query:  159 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            K ++  L   DPE+  II+ E  RQ   ++LI SENFT+ SV  A+G+ + NKYSEGYPGARYYGGNE+ID  E LCQ+RALEAF + P++WGVNVQ+LSGSP+N QVY AL+KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGLVAAGV
Sbjct:   11 KMVSGHLSETDPEVEQIIKDEVDRQKHSIDLIASENFTTTSVFDALGTPLCNKYSEGYPGARYYGGNEHIDRIERLCQQRALEAFHVTPDRWGVNVQTLSGSPANLQVYQALMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKILVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLVAAGV 231          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.010e-78
Identity = 139/221 (62.90%), Postives = 175/221 (79.19%), Query Frame = 3
Query:  159 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            K +++ L   DPE+  II+ E  RQ   + LI SEN TS +V  A+G+ M NKYSEGYPGARYYGGN++ID  E LCQ+RALEAF + P++WGVNVQSLSGSP+N QVY AL+KPH+R+M L LP GGHLSHGYQT+T+KISAVS +FE+ PYR++  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGLVAAGV
Sbjct:   11 KLISSHLSESDPEVDAIIKDEIDRQKHSIVLIASENLTSTAVFDALGTPMCNKYSEGYPGARYYGGNQHIDRMELLCQRRALEAFHVTPDRWGVNVQSLSGSPANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTETRKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILVAGTSAYCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGV 231          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.784e-77
Identity = 137/221 (61.99%), Postives = 175/221 (79.19%), Query Frame = 3
Query:  159 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            K + + L   DPE+  II+ E  RQ   ++LI SENFTS SV  A+G+ ++NKYSEGYPGARYYGGNE+ID  E LCQ+RAL+AF + P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD LEK+A L+RPK++VAG SAY RL DY+R+R++ +K  A ++ DMAHISGL+AAGV
Sbjct:   11 KLITSHLVDTDPEVDSIIKDEIERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGV 231          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 5.192e-77
Identity = 139/221 (62.90%), Postives = 172/221 (77.83%), Query Frame = 3
Query:  159 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LCQKRAL+ + LD + WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF P+LI+AG S Y+R  DY R+RK+ +   A ++ADMAH+SGLVAAGV
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGV 240          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 4.395e-76
Identity = 137/211 (64.93%), Postives = 168/211 (79.62%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            DP++A+I++ E  RQ + + LI SEN TS +V  A+GS M+NKYSEG PGARYYGGN++ID  E LCQ RALEAF LDP++WGVNVQ LSGSP+N QVY A++  H R+M LDLPHGGHLSHGYQT  +KISAVS +FETMPYR+N  TG IDYD LEK+A LFRPK++VAG SAY RL DYER+RK+ +   A ++ DMAHISGL+A+ V
Sbjct:   22 DPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPGARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLMGLDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLVAGTSAYCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEV 232          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.497e-76
Identity = 136/220 (61.82%), Postives = 175/220 (79.55%), Query Frame = 3
Query:  165 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L+  ++  DPE+ DI+  E++RQ + + LIPSENFTSV+VM  +GS M NKYSEGYPG RYYGGN+YIDMAESLCQKRALE + LDP KWGVNVQSLSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ     KIS +S +F+TM YR++ +TG +DYD L +++ LFRPK+IVAG SAYAR+ DY+R R++ +   A +L+DMAH+SGLVAAGV
Sbjct:   36 LSQHVQEFDPEMYDILTKERSRQKRSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMMGLDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVDPATGLVDYDTLSETSKLFRPKVIVAGTSAYARVLDYKRFREIADACGAYLLSDMAHVSGLVAAGV 255          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.847e-74
Identity = 133/213 (62.44%), Postives = 170/213 (79.81%), Query Frame = 3
Query:  186 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            +DPE+ DI+  E+ RQ   + LIPSENFTS SVM  +GS M NKYSEGYPG RYYGGN++IDMAESLCQKRALE + LDP+ WGVNVQ LSG+P+N   Y+A+++ +DR+M LDLPHGGHLSHGYQ  +  KIS +S +F+TMPY ++  TG IDYD L K++ LFRPK+IVAGASAY+R+ DY+R +++ +   A +++DMAHISGLVAAGV
Sbjct:   44 IDPEMYDILTKERKRQKHSITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQTGIIDYDFLSKTSKLFRPKVIVAGASAYSRVLDYKRFKEIADACGAYLMSDMAHISGLVAAGV 256          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.911e-71
Identity = 132/216 (61.11%), Postives = 165/216 (76.39%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            ++ VDPE+  I+  E++RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGN++ID AESLCQ RAL+ + LDPEKWGVNVQ+LSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ  +  KIS +S +F TMPY +N  TG IDYD L  ++ LFRPK+IVAG SAY+R  DY R RK+ +   A +L+DMAHISGLVAA V
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKVIVAGTSAYSRKLDYARFRKIADGCGAYLLSDMAHISGLVAANV 242          
The following BLAST results are available for this feature:
BLAST of CX671290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_RABIT2.753e-7863.80Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYM_RABIT3.595e-7865.12Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA3.595e-7862.44Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_ASHGO8.010e-7862.90Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST1.784e-7761.99Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC_BOVIN5.192e-7762.90Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_NEUCR4.395e-7664.93Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_ASHGO7.497e-7661.82Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_KLULA1.847e-7462.44Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA1.911e-7161.11Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671290 ID=CX671290; Name=CX671290; organism=Citrus sinensis; type=EST; length=822bp
GAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGC
TGGTGCTAGTGCTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGG
TTTGCAACAAACAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGT
GGTTTGGTTGCTGCTGGTGTCA
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