CX671290

Overview
NameCX671290
Unique NameCX671290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.747e-51
Identity = 106/215 (49.30%), Postives = 149/215 (69.30%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID + +E+ A   +PKLI+ GASAY++ +D++  R++ +K  A ++AD+AH +GLVAAG+
Sbjct:    6 LKRLDPEVFEAIANETRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNAVEEMALKVKPKLIITGASAYSQGFDFKAFREIADKVGAFLMADIAHPAGLVAAGL 211          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.893e-51
Identity = 103/215 (47.91%), Postives = 143/215 (66.51%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            LE  DP +A++I HE  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+
Sbjct:    4 LETFDPAVAEVIRHETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGL 209          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.346e-51
Identity = 106/210 (50.48%), Postives = 146/210 (69.52%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 818
            DP + +I E E  RQ   LE+I SENFTS +VM+A+GSV TNKY+EGYPG RYYGG EY D  E L  +RA E F  +     VNVQ  SGS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K++A    +++  Y +N+  G+IDYD++   A + +PKLIV GASAY R+ D+++ R++ ++  A+++AD+AHI+GLVAAG
Sbjct:    8 DPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHG-----AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGALLMADIAHIAGLVAAG 207          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.346e-51
Identity = 104/215 (48.37%), Postives = 143/215 (66.51%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            LE  DP +A+ I HE  RQ   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PKLIV GASAY R+ D+   R + +K  A+++ DMAHI+GLVAAG+
Sbjct:    4 LETFDPAVAEAIRHETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKLIVVGASAYPRVLDFAAFRAIADKVGALVMVDMAHIAGLVAAGL 209          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.346e-51
Identity = 105/211 (49.76%), Postives = 140/211 (66.35%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI++ DMAH +GL+AAG+
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGL 205          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.424e-50
Identity = 103/215 (47.91%), Postives = 143/215 (66.51%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            LE  DP++A+ I HE  RQ   LELI SENF S +V++A GSVMTNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PK+IV GASAY R  D+   R + +K  A+++ DMAHI+GLVAAG+
Sbjct:    4 LETFDPQVAEAIRHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKMIVVGASAYPRTIDFAAFRIIADKVGAVIMVDMAHIAGLVAAGL 209          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.428e-50
Identity = 105/212 (49.53%), Postives = 142/212 (66.98%), Query Frame = 3
Query:  186 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            VDPE+A+ IE E+ARQ   LELI SENF S +VM A GSVMTNKY+EG PGARYYGG EY+D+ E L + R  E F  +      NVQ  SG+ +N  VY A L+P   IM ++L HGGHL+HG      K++    +F  + Y +N  T  IDY++L + A   RP++IVAGASAY R+ D+++ R++ ++  A++  DMAHI+GLVAAG+
Sbjct:   11 VDPEVAEAIEKEEARQNNKLELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAE----HANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG-----SKVNISGKYFNIVDYGVNRDTERIDYEELREIALKARPQMIVAGASAYPRILDFKKFREIADEAGALLFVDMAHIAGLVAAGL 213          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.428e-50
Identity = 104/211 (49.29%), Postives = 140/211 (66.35%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  + F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI++ DMAH +GL+AAG+
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKQIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNKETGRVDYDQMEEIALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGL 205          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.172e-50
Identity = 104/211 (49.29%), Postives = 144/211 (68.25%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            DPEIA  I  E  RQ   +ELI SEN+ S +VM A+GS++TNKY+EGYPG RYYGG E +D  E L ++RA E F  +     VNVQ  SG+ +N  V  A+LKP D IM ++L HGGHL+HG       ++    +F  +PY +N+  G+IDYD++E+ A   +PK+I+AGASAYAR  D++R R++ +K  A+++ DMAHI+GLVAAG+
Sbjct:   11 DPEIASAITDEFERQNSHIELIASENWVSPAVMSAMGSILTNKYAEGYPGRRYYGGCECVDEVEELARERAKELFGAE----YVNVQPHSGAQANMAVQFAILKPGDTIMGMNLDHGGHLTHG-----SPVNFSGSYFHVVPYGVNDE-GFIDYDKVEEIALECKPKMIIAGASAYARTIDFKRFREIADKVDAVLMVDMAHIAGLVAAGL 211          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.172e-50
Identity = 102/215 (47.44%), Postives = 147/215 (68.37%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDYDQL+K A   RPK+IV+GASAY R+ D+E+IR++C++  A M+ DMAHI+GLVA G+
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPRIIDFEKIREICDEIDAYMMVDMAHIAGLVATGL 211          
The following BLAST results are available for this feature:
BLAST of CX671290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLP83.747e-5149.30Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_GEOSM4.893e-5147.91Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_NITSB8.346e-5150.48Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_GEOMG8.346e-5148.37Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_BACTN8.346e-5149.76Serine hydroxymethyltransferase OS=Bacteroides the... [more]
GLYA_GEOSL1.424e-5047.91Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_SYNWW2.428e-5049.53Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_BACV82.428e-5049.29Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_EUBR33.172e-5049.29Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_CLOBL3.172e-5047.44Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671290 ID=CX671290; Name=CX671290; organism=Citrus sinensis; type=EST; length=822bp
GAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGC
TGGTGCTAGTGCTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGG
TTTGCAACAAACAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGT
GGTTTGGTTGCTGCTGGTGTCA
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