CX671290

Overview
NameCX671290
Unique NameCX671290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBB (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.436e-44
Identity = 94/209 (44.98%), Postives = 135/209 (64.59%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 815
            D EI  +IE E  RQ  G+ELI SEN  S +VM+A+GS +TNKY+EGYPG RYYGG   +D  E + ++RA E F  +      NVQ  SGS +N  VY  +L+  D ++ +DL HGGHL+HG       ++     F  + Y +++ T  I+YD + + A   +PKLIVAGASAY+R+ D+++ R++C++  A ++ DMAHI+GLVAA
Sbjct:   10 DNEIYALIEKELERQQNGIELIASENVASEAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDGVEEIARERAKELFGAE----HANVQPHSGSQANMAVYFTILEHGDTVLGMDLSHGGHLTHG-----SPVNFSGKLFNFVSYGVDKDTEEINYDVVRELAIKHKPKLIVAGASAYSRIIDFKKFREICDEIGAYLMVDMAHIAGLVAA 209          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_CLAMS (Serine hydroxymethyltransferase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=glyA PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.436e-44
Identity = 98/221 (44.34%), Postives = 135/221 (61.09%), Query Frame = 3
Query:  159 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            +  NAPL  VDPEIA ++E E  RQ   LE+I SENF   +V+Q+ GSV+TNKY+EGYPG RYYGG E++D+AE L   RA   F  +      NVQ  SG+ +N  V  A+ +P D I+ L+L HGGHL+HG      K++     ++   Y ++  T  ID D + + A   RP++I+AG SAY R  D+   R + ++  A +  DMAH +GLVAAGV
Sbjct:    5 QSFNAPLSEVDPEIAAVLEQELGRQRGTLEMIASENFVPRAVLQSQGSVLTNKYAEGYPGRRYYGGCEFVDVAEQLAIDRAKSLFGAE----FANVQPHSGATANAAVLAAIAQPGDTILGLELAHGGHLTHG-----MKLNFSGKLYDAAAYGVDPDTFLIDMDVVREKALEHRPQVIIAGWSAYPRHLDFAAFRSIADEVGAKLWVDMAHFAGLVAAGV 216          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_AGRVS (Serine hydroxymethyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.436e-44
Identity = 94/213 (44.13%), Postives = 136/213 (63.85%), Query Frame = 3
Query:  174 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVA 812
            PL   DP+I   IE E  RQ   +ELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG +++D+AE L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D + +SA   +PKLI+AG +AY+R++D++R R++ ++  A ++ DMAHI+GLVA
Sbjct:   11 PLAETDPDIFGAIEKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQFVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRQDDNLLDMDAVAESARKHKPKLIIAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVA 214          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA2_SULDN (Serine hydroxymethyltransferase 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.436e-44
Identity = 102/213 (47.89%), Postives = 134/213 (62.91%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 815
            LE  D E+  IIE E  RQ   LE+I SENFTS +VM+A+GSV TNKY+EGYP  RYYGG EY D  E L   RA E F         NVQ  SGS +N  VY ALLK  D+++ +DL HGGHL+HG      K S     + +  Y + E+ G +DYD++ + A   +PK+IV GASAYAR  D+++ R++ +   A + AD+AH++GLVAA
Sbjct:    9 LEHADREVFSIIEGELKRQTAHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPYKRYYGGCEYADAVEQLAIDRACEIFGCK----FANVQPHSGSQANAAVYAALLKAGDKLLGMDLSHGGHLTHG-----SKPSFSGQNYSSFTYGV-EADGRMDYDKILEIAKAVQPKIIVCGASAYAREIDFKKFREIADAVGAFLFADIAHVAGLVAA 211          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 93/214 (43.46%), Postives = 136/214 (63.55%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 818
            L+  DPE+   I+ E  RQ + +ELI SENF   +V++A G+V+TNKY+EGYPG RYYGG EY+D+ E++ ++R   AF  +     VNVQ  SG+ +N  VY A L+P D ++ ++L  GGHL+HG       ++     +  +PY L+  T  I+ DQ+ + A   RPKLIVAG SAY R+ D++R R++  +  AI++ DMAH +GL A G
Sbjct:    4 LKRYDPEVFAAIQQEVERQQRNIELIASENFVPKAVLEAAGTVLTNKYAEGYPGRRYYGGCEYVDIVENIARERLKAAFGAE----HVNVQPHSGANANTAVYFAFLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGRTYNFVPYGLDPETERINMDQVAELARQHRPKLIVAGYSAYPRVLDFKRFREIAEEVGAILMVDMAHFAGLAATG 208          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_ROSCS (Serine hydroxymethyltransferase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 93/211 (44.08%), Postives = 132/211 (62.56%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            DP +A II+ E  RQ  GLELI SEN+ S +VM+A GS +TNKY+EGYPGARYYGG E++D  E L + R  E F  +      NVQ  SGS +N  VY   L+P D+++ ++L HGGHL+HG       ++     +  + Y ++  T  IDYDQ+ + A   RPK+I  GASAY+R  D+   R++ ++  A + AD+AH +GL+A G+
Sbjct:   11 DPAVARIIDGEMRRQRDGLELIASENYASRAVMEAQGSALTNKYAEGYPGARYYGGCEWVDQVEDLARARVKELFGAE----YANVQPHSGSQANMAVYFTFLRPGDKVLGMNLAHGGHLTHG-----SPVNFSGQLYTFVAYGIDPKTERIDYDQVAEIARRERPKMITVGASAYSRAIDFAIFRQIADEVGAFLFADIAHPAGLIAKGL 212          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_PROMH (Serine hydroxymethyltransferase OS=Proteus mirabilis (strain HI4320) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 94/211 (44.55%), Postives = 134/211 (63.51%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            DPE+ + +E E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  SGS +N  VY ALLKP D ++ ++L  GGHL+HG       ++     +  +PY ++E+ G IDY  + + A   +PK+I+ G SAY+ L D+ ++R++ +   A +  DMAH++G++AAGV
Sbjct:   12 DPELWNAMEGEVTRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKALFGAD----YANVQPHSGSQANAAVYMALLKPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIVPYGIDEA-GKIDYQDIAEQAKKHKPKMIIGGFSAYSGLVDWAKMREIADSVGAYLFVDMAHVAGMIAAGV 212          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_MYCHJ (Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 96/214 (44.86%), Postives = 138/214 (64.49%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 818
            +++ D +I+++I  E  RQ   +ELI SEN+ S  V+ A G+  +NKY EGYPG RYYGG  +ID  E +  +R  + F+++      NVQ  SGS +N  V+ ALLKP D+I+ LDL  GGHLSHGY     KI+   +F+  + Y L+E+   +DYD +EK A   +P LI+ G SAY+R  D+ R R++ +K  A +LAD+AHI+GL+AAG
Sbjct:    5 IKLRDQQISELINLESKRQNSQIELIASENYASEDVILANGTSPSNKYGEGYPGKRYYGGCTFIDQIEKIAIERVKKLFKIE----YANVQPYSGSSANAAVFAALLKPGDKILGLDLNAGGHLSHGY-----KINFSGMFYSGISYFLDENE-LLDYDAIEKIALKTKPNLIICGYSAYSRKIDFARFRQIADKVNAFLLADIAHIAGLIAAG 208          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_MYCH7 (Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain 7448) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 818
            +++ D +I+++I  E  RQ   +ELI SEN+ S  V+ A G+ ++NKY EGYPG RYYGG  +ID  E +  +R  + F+++      NVQ  SGS +N  V+ ALLKP D+I+ LDL  GGHLSHGY     KI+   +F+  + Y L+E+   +DY+ +EK A   +P LI+ G SAY+R  D+ R R++ +K  A +LAD+AHI+GL+AAG
Sbjct:    5 IKLRDQQISELINLESKRQNSQIELIASENYASEDVILANGTSLSNKYGEGYPGKRYYGGCTFIDQIEKIAIERVKKLFKIE----YANVQPYSGSSANAAVFAALLKPGDKILGLDLNAGGHLSHGY-----KINFSGMFYSGISYFLDENE-LLDYEAIEKIALKTKPNLIICGYSAYSRKIDFARFRQIADKVNAFLLADIAHIAGLIAAG 208          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_MYCCT (Serine hydroxymethyltransferase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.794e-44
Identity = 94/212 (44.34%), Postives = 138/212 (65.09%), Query Frame = 3
Query:  186 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            ++ +I + +  E  RQ   +ELI SEN+ S +V++  GSV+TNKY+EGYPG RYYGG E+ID  ESL  + A E F  +      N+Q  SGS +N   Y ALL+P DR++A+ L  GGHL+HGY      I+     ++   Y +N+ T  +DY ++E+     +PKLIVAGASAY+R+ D+++ +++ +K  A ++ DMAHI+GLVAAGV
Sbjct:    5 INSKIRESLNKELKRQQSHIELIASENYVSQAVLELNGSVLTNKYAEGYPGKRYYGGCEFIDEIESLGIQTAKELFHAE----HANIQPHSGSQANDAAYKALLEPKDRVVAMGLDAGGHLTHGY-----PINFSGYTYDFRFYGVNKDTEQLDYQEIEQIVLEHKPKLIVAGASAYSRIIDFKKFKEIADKVGAYLMVDMAHIAGLVAAGV 207          
The following BLAST results are available for this feature:
BLAST of CX671290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOBB4.436e-4444.98Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLAMS4.436e-4444.34Serine hydroxymethyltransferase OS=Clavibacter mic... [more]
GLYA_AGRVS4.436e-4444.13Serine hydroxymethyltransferase OS=Agrobacterium v... [more]
GLYA2_SULDN4.436e-4447.89Serine hydroxymethyltransferase 2 OS=Sulfurimonas ... [more]
GLYA_SYMTH5.794e-4443.46Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_ROSCS5.794e-4444.08Serine hydroxymethyltransferase OS=Roseiflexus cas... [more]
GLYA_PROMH5.794e-4444.55Serine hydroxymethyltransferase OS=Proteus mirabil... [more]
GLYA_MYCHJ5.794e-4444.86Serine hydroxymethyltransferase OS=Mycoplasma hyop... [more]
GLYA_MYCH75.794e-4444.39Serine hydroxymethyltransferase OS=Mycoplasma hyop... [more]
GLYA_MYCCT5.794e-4444.34Serine hydroxymethyltransferase OS=Mycoplasma capr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671290 ID=CX671290; Name=CX671290; organism=Citrus sinensis; type=EST; length=822bp
GAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGC
TGGTGCTAGTGCTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGG
TTTGCAACAAACAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGT
GGTTTGGTTGCTGCTGGTGTCA
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