CX671290

Overview
NameCX671290
Unique NameCX671290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.507e-49
Identity = 107/215 (49.77%), Postives = 140/215 (65.12%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L  VDPEIA ++  E  RQ +GLELI SENF S +VM+AVGSV+TNKY+EGYPG RYYGG E +D+AE+L   RA + F  D     VNVQ+ SGS +N   + AL+KP D +++LDL  GGHL+HG        +     ++ + Y L   T  ID+ Q+E  A   +PK+IV GASAY R  D+ + R++ +   A ML DMAHI+GLVAAGV
Sbjct:    7 LAEVDPEIARVLREETQRQEEGLELIASENFVSPAVMEAVGSVLTNKYAEGYPGKRYYGGCEVVDVAENLAIARAKDLFGAD----AVNVQAHSGSQANMGAFMALMKPGDTMLSLDLNSGGHLTHG-----ATFNFSGKLYKVVHYGLTRDTETIDFAQVESLAKEHKPKVIVVGASAYPRTLDFAKFREIADAVGAAMLVDMAHIAGLVAAGV 212          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 108/215 (50.23%), Postives = 143/215 (66.51%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L+  D  I D I  E  RQ + LELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  A+LKP DRIM LDL HGGHL+HG      K++     FE   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D++  R V +K  A ++AD+AH +GL+AAG+
Sbjct:    6 LQRQDKGIFDAITAEVRRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTHG-----SKVNFSGQLFEAHSYGVDRETGCIDMNKVEEMALEVRPKLIICGASAYSQGFDFKAFRDVADKVGAFLMADIAHPAGLIAAGL 211          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 103/218 (47.25%), Postives = 140/218 (64.22%), Query Frame = 3
Query:  168 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            N  +   DPE+A  I +E ARQ   +ELI SEN+ S +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL P D ++ + L HGGHL+HG      K+S     +  + Y LN  TG IDY+++E+ A   +P++IVAG SAY+++ D++R R + +K  A +  DMAH++GLVAAGV
Sbjct:    4 NISIAEFDPELAQAITNEDARQEAHIELIASENYCSPAVMEAQGSKLTNKYAEGYPGKRYYGGCEYVDIIEQLAIDRAKELFGAD----YANVQPHAGSQANSAVYLALLNPGDTVLGMSLAHGGHLTHG-----AKVSFSGKTYNAIQYGLNPETGEIDYEEVERLALEHKPRMIVAGFSAYSQIVDWQRFRDIADKIGAYLFVDMAHVAGLVAAGV 212          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_PORGI (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 101/211 (47.87%), Postives = 138/211 (65.40%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            D  I D+IE E  RQ KG+ELI SENF S  VMQA+GS MTNKY+EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD +EK A   +PKLI+ G SAY+R +DY+R+R++ +K  A+++ DMAH +GL+AAG+
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---W-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGL 205          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_PORG3 (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 101/211 (47.87%), Postives = 138/211 (65.40%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            D  I D+IE E  RQ KG+ELI SENF S  VMQA+GS MTNKY+EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD +EK A   +PKLI+ G SAY+R +DY+R+R++ +K  A+++ DMAH +GL+AAG+
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---W-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGL 205          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 101/215 (46.98%), Postives = 141/215 (65.58%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L  VDPE+A  ++ EK RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D  E L  +RA   F  +      NVQ  SG+ +N  VY A L+P D ++ ++L HGGHL+HG       ++    +F  + Y ++  TG IDYD++ + A   +PKLIVAGASAY R+ D+ R R + ++  A+++ DMAHI+GLVAAG+
Sbjct:    7 LHQVDPEVAAAMDREKKRQKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAE----HANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTHG-----SPVNISGKYFRFVAYGVDAHTGRIDYDEVARIARETKPKLIVAGASAYPRVLDFARFRAIADEVGAMLMVDMAHIAGLVAAGL 212          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_GEOTN (Serine hydroxymethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 99/211 (46.92%), Postives = 140/211 (66.35%), Query Frame = 3
Query:  189 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            DP++   IE E+ RQ   +ELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG EY+D+ E L ++RA + F  +      NVQ  SG+ +N  VY  +LKP D ++ ++L HGGHL+HG       ++   + +  + Y ++  T  IDYD + + A L RPKLIVAGASAY R+ D+ + R++ ++  A ++ DMAHI+GLVAAG+
Sbjct:    8 DPQVFATIEQERKRQHAKIELIASENFVSRAVMEAQGSVMTNKYAEGYPGRRYYGGCEYVDVVEDLARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLKPGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDPETHVIDYDDVREKARLHRPKLIVAGASAYPRVIDFAKFREIADEVGAYLMVDMAHIAGLVAAGL 209          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 99/215 (46.05%), Postives = 147/215 (68.37%), Query Frame = 3
Query:  177 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY++L+K A   RPK+IV+GASAY R+ D+++IR++C++  A M+ DMAHI+GLVA G+
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIALENRPKMIVSGASAYPRIIDFQKIREICDEIDAYMMVDMAHIAGLVATGL 211          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 98/219 (44.75%), Postives = 142/219 (64.84%), Query Frame = 3
Query:  162 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 818
            +++  L   DP++A  I+HE  RQ +GLE+I SENF S +V++A GSV TNKY+EGYPG RYYGG E+ D+ E+L + RA + F  +      NVQ  SGS +N   Y ++++P D I+ LDL HGGHL+HG+     K++     +    Y + + T  IDYD+LE  A   +PK+I+ G SAY R++D+ R+R++ +K  A +L DMAH +GLVA G
Sbjct:    4 RMSLSLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGH-----KLNFSGKLYRVASYGVRKDTETIDYDELEAIAVREQPKMIIGGGSAYPRIFDFARMRQIADKVGAFLLVDMAHFAGLVAGG 213          
BLAST of CX671290 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.981e-49
Identity = 98/217 (45.16%), Postives = 141/217 (64.98%), Query Frame = 3
Query:  171 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 821
            A L   DP IAD+I  E+ RQ + + LIPSEN+ S +V++A G+V+TNKYSEGYP  RYY G ++ID  E++  +RA + F +D      NVQ  SGSP+N  +Y ALL P D +M + LP GGHL+HG+      +SA  I+F ++ Y +   TG ID+D++ + A   RPK+I AG +A  R+ D+    ++  +  A+++AD+AHISGLVA GV
Sbjct:    9 AALTATDPTIADLIRAEERRQSEKIRLIPSENYVSKAVLEATGTVLTNKYSEGYPNRRYYEGQQFIDQIETIAIERAKQLFGVD----HANVQPYSGSPANLAIYLALLSPGDTVMGMALPMGGHLTHGW-----PVSATGIWFRSVQYGVRRDTGRIDFDEVREVARRERPKVIFAGGTAIPRIIDFAAFAEIAREVNAVLVADIAHISGLVAGGV 216          
The following BLAST results are available for this feature:
BLAST of CX671290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MYXXD3.507e-4949.77Serine hydroxymethyltransferase OS=Myxococcus xant... [more]
GLYA_CHLPB4.580e-4950.23Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_ACIRA4.580e-4947.25Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA_PORGI5.981e-4947.87Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_PORG35.981e-4947.87Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_HELMI5.981e-4946.98Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_GEOTN5.981e-4946.92Serine hydroxymethyltransferase OS=Geobacillus the... [more]
GLYA_CLOBJ5.981e-4946.05Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_ACIC55.981e-4944.75Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA_ACIC15.981e-4945.16Serine hydroxymethyltransferase OS=Acidothermus ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671290 ID=CX671290; Name=CX671290; organism=Citrus sinensis; type=EST; length=822bp
GAGAAGCAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGC
TGGTGCTAGTGCTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGG
TTTGCAACAAACAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGT
GGTTTGGTTGCTGCTGGTGTCA
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