EY692461

Overview
NameEY692461
Unique NameEY692461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11139 contig Csv1_Contig11139:150..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_GEOMG (3-isopropylmalate dehydrogenase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.060e-25
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQ--GCTKVGTQEMGDAVVAAL 277
            SASL     GMYEP  GSAPDIAGQGIANP+A ILS+ MMLR+SF + DAADAI+ AV+ VLDQG RT DI+ +  G   V T+EMGDA++ AL
Sbjct:  269 SASLAEGTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLRFSFGMVDAADAIDNAVAKVLDQGCRTRDIFQEKPGEKLVNTKEMGDAIIVAL 362          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_AQUAE (3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.060e-25
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SAS+  +   +YEP HGSAPDIAG+GIANP+ATILS +MML+YSFN+  A D IEKA+   L+QG RT DI+S+GC KVGT+E+ D ++  L  L
Sbjct:  266 SASI-GDRYALYEPVHGSAPDIAGKGIANPIATILSAAMMLKYSFNMDKAHDLIEKAIEETLNQGYRTPDIYSEGCIKVGTKEITDKILENLERL 359          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_SYNP6 (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=leuB PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.204e-24
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRN 283
            SASL A   G++EP HGSAPDIAGQ  ANPLA +LS +MMLRY  +  +AA  IE AV+ VLDQG RTGD++S+G T VG + MGDA++AAL +
Sbjct:  268 SASLGAEGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDEPEAAARIEAAVNQVLDQGYRTGDLYSEGMTLVGCKGMGDALLAALES 361          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_SYNE7 (3-isopropylmalate dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=leuB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.204e-24
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRN 283
            SASL A   G++EP HGSAPDIAGQ  ANPLA +LS +MMLRY  +  +AA  IE AV+ VLDQG RTGD++S+G T VG + MGDA++AAL +
Sbjct:  268 SASLGAEGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDEPEAAARIEAAVNQVLDQGYRTGDLYSEGMTLVGCKGMGDALLAALES 361          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_AGRT5 (3-isopropylmalate dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=leuB PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.573e-24
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 2
Query:    2 SASLDA------NNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            SASL A        K MYEP HGSAPDIAG+ IANP+A I S +M LRYSFN+ D A  +E A++ VLD+G+RT DI + GC +VGT +MGDAV+A  + L
Sbjct:  268 SASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSIANPIAMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDAVLAEFKAL 368          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_THEEB (3-isopropylmalate dehydrogenase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.683e-24
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL  +   ++EP HGSAPDIAGQ  ANPLA +LS +MMLRY  N   AA AIE+A++ VLDQG RTGD+ S+GCT VG +EMG+ ++  L
Sbjct:  268 SASLGESGPALFEPVHGSAPDIAGQDKANPLAMVLSAAMMLRYGLNQPAAAQAIEEAITAVLDQGYRTGDLMSEGCTLVGCREMGNLLIKEL 359          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJB (3-isopropylmalate dehydrogenase OS=Synechococcus sp. GN=leuB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.504e-24
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL ++  G+YEP HGSAPDIAGQ  ANP+A +LS ++MLRYS +   AAD IE+AV  VL QG RT D++S+G T VG QEMG+ +VAAL
Sbjct:  274 SASLGSSGPGLYEPVHGSAPDIAGQDKANPIAQVLSGALMLRYSLDQPQAADRIEQAVEAVLAQGYRTPDLYSEGMTLVGCQEMGEKLVAAL 365          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJA (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain JA-3-3Ab) GN=leuB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.977e-24
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL ++  G+YEP HGSAPDIAGQ  ANP+A +LS +M+LRYS +   AAD IE+AV  VL QG RT DI+S+G T VG +EMG+ ++AAL
Sbjct:  274 SASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLRYSLDQPQAADRIEQAVEAVLAQGYRTADIYSEGMTLVGCREMGEKILAAL 365          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_DESHY (3-isopropylmalate dehydrogenase OS=Desulfitobacterium hafniense (strain Y51) GN=leuB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.806e-24
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL +  +GMYEP HGSAPDIAG+ +ANPLATILS ++MLRYSF +   A  IE AV  VL+QG RTGD+   G   VGT EMGDAV+AAL
Sbjct:  262 SASL-SGTQGMYEPAHGSAPDIAGKNLANPLATILSAALMLRYSFGMEAEALRIESAVEKVLEQGYRTGDLAQAGDKVVGTIEMGDAVLAAL 352          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PELUB (3-isopropylmalate dehydrogenase OS=Pelagibacter ubique GN=leuB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 2
Query:    2 SASLDANNK-----GMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALR 280
            SASL A NK      MYEP HGSAPDIAG+ IANP+A+ILS +M LRYS +L   ADA+EKAV  VL+ GLRT DI SQG  +V T  MGDA+++ L+
Sbjct:  271 SASLGAKNKDGEMRAMYEPIHGSAPDIAGKEIANPIASILSFAMALRYSLDLDSEADALEKAVQDVLNDGLRTKDILSQGKKEVSTSAMGDAIISKLQ 368          
The following BLAST results are available for this feature:
BLAST of EY692461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
LEU3_GEOMG7.060e-2563.833-isopropylmalate dehydrogenase OS=Geobacter metal... [more]
LEU3_AQUAE7.060e-2558.953-isopropylmalate dehydrogenase OS=Aquifex aeolicu... [more]
LEU3_SYNP61.204e-2460.643-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SYNE71.204e-2460.643-isopropylmalate dehydrogenase OS=Synechococcus e... [more]
LEU3_AGRT51.573e-2456.443-isopropylmalate dehydrogenase OS=Agrobacterium t... [more]
LEU3_THEEB2.683e-2458.703-isopropylmalate dehydrogenase OS=Thermosynechoco... [more]
LEU3_SYNJB3.504e-2460.873-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SYNJA5.977e-2459.783-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_DESHY7.806e-2464.133-isopropylmalate dehydrogenase OS=Desulfitobacter... [more]
LEU3_PELUB1.332e-2360.203-isopropylmalate dehydrogenase OS=Pelagibacter ub... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692461 ID=EY692461; Name=EY692461; organism=Citrus sinensis; type=EST; length=352bp
GTCGGCGTCCCTGGATGCCAACAACAAGGGCATGTACGAGCCGTGCCACG
GTTCTGCGCCGGACATCGCAGGGCAGGGCATTGCCAACCCGTTGGCGACC
ATTTTGTCGGTGTCGATGATGCTGCGTTACAGCTTCAACCTGACCGACGC
GGCGGATGCCATCGAAAAGGCTGTGAGCCTGGTGCTGGACCAAGGCCTGC
GCACCGGCGACATCTGGTCCCAGGGTTGCACCAAGGTCGGTACGCAAGAA
ATGGGCGACGCAGTAGTCGCCGCGCTGCGGAATCTGTAATCTCTCGGGCC
CGCTTGCAGATGTTGCTGCAAGGCGGCCCACTTTTGAACAAGGTGTAGTT
GC
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