EY692461

Overview
NameEY692461
Unique NameEY692461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11139 contig Csv1_Contig11139:150..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_GLUOX (3-isopropylmalate dehydrogenase OS=Gluconobacter oxydans GN=leuB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   14 DANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAALRNL 286
            D     +YEP HGSAPDIAG+GIANPLA ILS +M+LRYS N  + AD IE AVS VL  GLRTGDI S G  +VGT+ MG AV+  +  L
Sbjct:  278 DGKRNALYEPIHGSAPDIAGKGIANPLAQILSFAMLLRYSLNRAEDADLIEMAVSNVLASGLRTGDIMSPGMARVGTEMMGQAVLREMEKL 368          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_DESPS (3-isopropylmalate dehydrogenase OS=Desulfotalea psychrophila GN=leuB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.271e-23
Identity = 57/92 (61.96%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL+  N G++EP  GSAPDIAGQGIANP+A ILS +MMLRYS    +AADAIE AV   LD+G+ T DI       V T EMGDA+VAAL
Sbjct:  266 SASLNTENFGLFEPAGGSAPDIAGQGIANPIAEILSAAMMLRYSLGYGEAADAIEAAVEKTLDRGICTADIAVDRSQAVNTAEMGDAIVAAL 357          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_PELCD (3-isopropylmalate dehydrogenase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.923e-22
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIW--SQGCTKVGTQEMGDAVVAAL 277
            SASL   + GMYEP  GSAPDIAG+ IANP+A ILS +M+LRYS  L DAADA+EKAV   L  GLRTGDI+  + G   V T  MGDAVVA L
Sbjct:  269 SASLAEGSFGMYEPAGGSAPDIAGKNIANPVAQILSAAMLLRYSCGLADAADAVEKAVENCLAAGLRTGDIYQDADGEQLVSTSAMGDAVVAEL 362          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_SYNS9 (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain CC9902) GN=leuB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.511e-22
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL ++  G++EP HGSAPDIAGQ  ANP+A +LS +MMLR     + AAD +E+AV  VL  G RTGD+ S+GCT +G Q MG+ ++ AL
Sbjct:  266 SASLGSDGPGLFEPVHGSAPDIAGQDKANPMAMVLSAAMMLRIGLKQSSAADDLERAVDAVLASGFRTGDLMSEGCTPLGCQAMGEQLLKAL 357          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_RHOBA (3-isopropylmalate dehydrogenase OS=Rhodopirellula baltica GN=leuB PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.511e-22
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTK-VGTQEMGDAVVAAL 277
            SASL     G+YEP HGSAPDIAG+ +ANPLATIL+ +MMLR+S  LTD A+AIEKAV+ V+  GLRT D+     +K V T+EMG AVVA L
Sbjct:  265 SASLGDGGPGLYEPIHGSAPDIAGKSVANPLATILAAAMMLRHSLGLTDEAEAIEKAVAGVITDGLRTPDLARGDQSKSVSTEEMGAAVVAKL 357          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_HELHP (3-isopropylmalate dehydrogenase OS=Helicobacter hepaticus GN=leuB PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.511e-22
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL     GMYEP HGSAPDIAGQ  ANP+ TILS +MML  SF LT  ++ I+KAV   LD+G RTGD+ S+G   VG ++MGD ++ ++
Sbjct:  265 SASLSNGTLGMYEPIHGSAPDIAGQDKANPIGTILSAAMMLELSFGLTKESEVIQKAVQNALDKGYRTGDMMSEGMQLVGCEQMGDVILESV 356          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_DESDG (3-isopropylmalate dehydrogenase OS=Desulfovibrio desulfuricans (strain G20) GN=leuB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.511e-22
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAV 265
            SASL A   G++EP HGSAPDIAGQ  ANPLATILS +MMLR+SF L   A+A+E AV  VL  G RTGDI  QG T VG   MG+ V
Sbjct:  267 SASLGAGGPGLFEPIHGSAPDIAGQNKANPLATILSTAMMLRHSFGLEKEAEAVEGAVQQVLKAGYRTGDIMDQGGTLVGCNTMGNLV 354          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_ANAVT (3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.511e-22
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL A+  G++EP HGSAPDIAG   ANPLA +LS +MMLRY+ N   AAD IE+AV  VL+QG RTGDI S G   +G + MGD+++ AL
Sbjct:  268 SASLGASGPGVFEPVHGSAPDIAGLDKANPLAQVLSAAMMLRYALNQPQAADKIEQAVLQVLEQGDRTGDIMSVGMNLLGCRAMGDSLIKAL 359          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_ANASP (3-isopropylmalate dehydrogenase OS=Anabaena sp. (strain PCC 7120) GN=leuB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.280e-22
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL A+  G++EP HGSAPDIAGQ  ANPLA +LS +MMLRY+ +   AAD IE+AV  VL+QG RTGDI S G   +G + MGD+++ AL
Sbjct:  268 SASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYALDQPQAADKIEQAVLQVLEQGDRTGDIISVGMNLLGCRGMGDSLIKAL 359          
BLAST of EY692461 vs. ExPASy Swiss-Prot
Match: LEU3_ZYMMO (3-isopropylmalate dehydrogenase OS=Zymomonas mobilis GN=leuB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.283e-22
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 2
Query:    2 SASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFNLTDAADAIEKAVSLVLDQGLRTGDIWSQGCTKVGTQEMGDAVVAAL 277
            SASL++  KG+YEP HGSAPDIAG G ANPLATILS +MMLRYS      AD IEKAVS  L++G RT D+      K+ T EMG+AV+AAL
Sbjct:  261 SASLNSEGKGLYEPIHGSAPDIAGLGKANPLATILSGAMMLRYSLKREADADRIEKAVSTALEKGARTADLGG----KMTTSEMGNAVLAAL 348          
The following BLAST results are available for this feature:
BLAST of EY692461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
LEU3_GLUOX1.332e-2360.443-isopropylmalate dehydrogenase OS=Gluconobacter o... [more]
LEU3_DESPS2.271e-2361.963-isopropylmalate dehydrogenase OS=Desulfotalea ps... [more]
LEU3_PELCD1.923e-2262.773-isopropylmalate dehydrogenase OS=Pelobacter carb... [more]
LEU3_SYNS92.511e-2254.353-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_RHOBA2.511e-2261.293-isopropylmalate dehydrogenase OS=Rhodopirellula ... [more]
LEU3_HELHP2.511e-2255.433-isopropylmalate dehydrogenase OS=Helicobacter he... [more]
LEU3_DESDG2.511e-2262.503-isopropylmalate dehydrogenase OS=Desulfovibrio d... [more]
LEU3_ANAVT2.511e-2258.703-isopropylmalate dehydrogenase OS=Anabaena variab... [more]
LEU3_ANASP3.280e-2258.703-isopropylmalate dehydrogenase OS=Anabaena sp. (s... [more]
LEU3_ZYMMO4.283e-2261.963-isopropylmalate dehydrogenase OS=Zymomonas mobil... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692461 ID=EY692461; Name=EY692461; organism=Citrus sinensis; type=EST; length=352bp
GTCGGCGTCCCTGGATGCCAACAACAAGGGCATGTACGAGCCGTGCCACG
GTTCTGCGCCGGACATCGCAGGGCAGGGCATTGCCAACCCGTTGGCGACC
ATTTTGTCGGTGTCGATGATGCTGCGTTACAGCTTCAACCTGACCGACGC
GGCGGATGCCATCGAAAAGGCTGTGAGCCTGGTGCTGGACCAAGGCCTGC
GCACCGGCGACATCTGGTCCCAGGGTTGCACCAAGGTCGGTACGCAAGAA
ATGGGCGACGCAGTAGTCGCCGCGCTGCGGAATCTGTAATCTCTCGGGCC
CGCTTGCAGATGTTGCTGCAAGGCGGCCCACTTTTGAACAAGGTGTAGTT
GC
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