CX671279

Overview
NameCX671279
Unique NameCX671279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671279 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.094e-33
Identity = 78/217 (35.94%), Postives = 110/217 (50.69%), Query Frame = -3
Query:  218 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 853
            C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY             L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC     A +  R+G++  +C +  + PG +L C
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX671279 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.176e-32
Identity = 86/220 (39.09%), Postives = 105/220 (47.73%), Query Frame = -3
Query:  218 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPP--SDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 853
            CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C I E        YCD +    YPC    KYYGRGP+QLSWNYNY             L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC         +RI F+  +C  FG+ PGD+L C
Sbjct:  107 CPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CX671279 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 78/218 (35.78%), Postives = 111/218 (50.92%), Query Frame = -3
Query:  218 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 853
            C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY             L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX671279 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 81/218 (37.16%), Postives = 114/218 (52.29%), Query Frame = -3
Query:  218 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 853
            C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG +L C
Sbjct:   92 CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLL--GQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX671279 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.316e-30
Identity = 78/222 (35.14%), Postives = 108/222 (48.65%), Query Frame = -3
Query:  218 DERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD----PNYPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 862
            D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY             L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GD+L C
Sbjct:   85 DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX671279 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -3
Query:  314 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 451
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX671279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE3.094e-3335.94Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU1.176e-3239.09Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ4.468e-3235.78Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA5.835e-3237.16Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_PHAVU9.316e-3035.14Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.549e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B02-C4-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671279 ID=CX671279; Name=CX671279; organism=Citrus sinensis; type=EST; length=897bp
TTTTTTGGTGAAGACTCATTGATCCATGTTGGATCAGTCTTATTTAATTT
ACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAG
TGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACT
AAAACGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCA
TAAGGTCGTTGGTTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAA
CTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCAT
TCCCACCTTGGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGA
CCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCA
TTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCA
TCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGA
AGGTCTGGATTGTTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCA
CCGTAAGTAATTGTAATTCCAAGAGAGTTGAATTGGACCTCGGCCATAGT
ACTTCCCTCGACATGGATAGTTAGGATCACAGTAGTCGGACGGAGGGCTA
ACTTCGCTTATAAAGCAATATCCCCAAGCATATTCGCCACCAGGTGCATC
GGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCGA
TTTCTCTTTTACGCATGGTTTCATTTCCAGAGTTACCAAAGCCTGGAAAA
GCTTGGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCCTCTGGCAGG
GCATCGTTCATCATTTCTATACTCAGGCAAGTCATCAAACATCTCCC
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