CX306607

Overview
NameCX306607
Unique NameCX306607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_CAPHI (60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.665e-33
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFV--TGSESQNIAP 738
            TR +F +PFRK G V L+TY+  Y+ GD VDIK   ++ KGMPHK YHGKTGRV+NVT  A+G+ +NK V  +I+ KRINVR+EHI+ SK R  FL+R+ EN++ K   +  K T   LKR P  P  A FV   G E + + P
Sbjct:   11 TRYMFSRPFRKHGVVPLATYMRIYRKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKE-KGTWVQLKRQPAPPREAHFVRTNGKEPELLEP 153          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.300e-32
Identity = 73/144 (50.69%), Postives = 94/144 (65.28%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFV--TGSESQNIAP 738
            TR +F +PFRK G V L+TY+  YK GD VDIK   ++ KGMPHK YHGKTGRV+NVT  A+G+ +NK V  +I+ KRINVR+EHI+ SK R  FL+R+ EN++ K   +  K T   LKR    P  A FV   G E + + P
Sbjct:   11 TRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKE-KGTWVQLKRHAAPPREAHFVRTNGKEPELLEP 153          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 9.580e-32
Identity = 72/144 (50.00%), Postives = 93/144 (64.58%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFV--TGSESQNIAP 738
            TR +F +PFRK G V L+TY+  YK GD VDIK   ++ KGMPHK YHGKTGRV+NVT  A+G+ +NK V  +I+ KRINVR+EHI+ SK R  FL+R+ EN++ K   +  K T   L   P  P  A FV   G E + + P
Sbjct:   11 TRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKE-KGTWVQLNGQPAPPREAHFVRTNGKEPELLEP 153          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_CAEEL (60S ribosomal protein L21 OS=Caenorhabditis elegans GN=rpl-21 PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.360e-30
Identity = 74/145 (51.03%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVEN-EKHKALVRAGKATKKVLKRDPGTPNPAKFVT--GSESQNIAP 738
            TR +F + FRK G   LSTY   YK GD VDIK N +  KGMP K YHG+TGR++NVT  A+G+ +NK V   I+ KRIN+R+EHI+ SKCRT FL R+  N EK KA   AG+     LKR P  P  A  VT   +E + +AP
Sbjct:   11 TRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPV-PALKRLPVAPRGAHTVTTQNNEPELLAP 154          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_PYUST (60S ribosomal protein L21 (Fragment) OS=Pyura stolonifera GN=RPL21 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-30
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 1
Query:  319 DLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVENEKHKALVRAGKATKKVLKRDPGTPNPAKFVTGS 717
            D+F + FR+RG + L+ YL  YK GD VDIK + S+ K  PHK YHGKTGR++NVT  A+G+ +NK V  RI+ KRINVR+EHI+ SK R  F++R+ ENE+ +   R  K  +  LKR P  P    FV  S
Sbjct:   12 DMFSKKFRERGAIPLNKYLTVYKKGDIVDIKGDGSVQKVCPHKVYHGKTGRIFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEARE-KKIRVNLKRQPQQPRTGHFVRSS 143          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_ENTHI (60S ribosomal protein L21 OS=Entamoeba histolytica GN=RPL21 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLVE----NEKHKALVRAGKATKKV-LKRDPGTPNPAKFVTGSE 720
            TR LF++PFR  G    ST L  YK+GDYV I  N SI  G+P+K +HGKTGRVWNV P AIGV +NK V NRI+ KR+++  EHI+ S C+  FLER        +++  L + GK    +  KR P  P PA+ + G++
Sbjct:   11 TRKLFKRPFRGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIRPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPLLPLPAKRLPKQPRPAELIKGAD 151          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_ENCCU (60S ribosomal protein L21 OS=Encephalitozoon cuniculi GN=RPL21 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQKSKCRTHFLERLV 612
            TR LF Q  RK G   +S YLE Y+IGD VDI  NP++ KGMPHK+YHG+TGRV++V PR++ V + K V  + + K+I VR+EH++KS+C     +R++
Sbjct:   10 TRYLFSQDHRKHGVAHVSKYLEKYEIGDMVDILVNPAMMKGMPHKYYHGRTGRVYDVKPRSLNVALYKRVRGKYVIKKIIVRIEHVRKSRCSEESQKRIL 109          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_SULTO (50S ribosomal protein L21e OS=Sulfolobus tokodaii GN=rpl21e PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPV-KLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHIQK 576
            TR L  +  R+RG V +LS  +E +K GDYV IK NPS+HKGMPH+ YHGK G +     +A  V++   +G++  +K I VR EH+ K
Sbjct:   12 TRKLLTKNVRERGAVPRLSLLMEEFKEGDYVVIKINPSVHKGMPHRRYHGKVGVIQGKRGKAYIVRVT--LGDK--EKVIIVRPEHLAK 96          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_PIG (60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPVKLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTG 468
            TR +F +PFRK G V L+TY+  YK GD VDIK   ++ KG+PHK YHGKTG
Sbjct:   11 TRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGLPHKCYHGKTG 62          
BLAST of CX306607 vs. ExPASy Swiss-Prot
Match: RL21_SULAC (50S ribosomal protein L21e OS=Sulfolobus acidocaldarius GN=rpl21e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  313 TRDLFQQPFRKRGPV-KLSTYLENYKIGDYVDIKANPSIHKGMPHKFYHGKTGRVWNVTPRAIGVQINKPVGNRIMKKRINVRVEHI 570
            TR L ++  R++G + KLS  + +Y  G+YV +K NPSIHKGMPH+ YHGK G V     +A  V++N  +G++  ++ + VR EH+
Sbjct:   12 TRKLLEKKVREKGAIPKLSLLMHDYSQGEYVVVKINPSIHKGMPHRRYHGKVGLVVGKRGKAYEVKVN--IGDK--ERVLIVRPEHL 94          
The following BLAST results are available for this feature:
BLAST of CX306607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL21_CAPHI8.665e-3350.6960S ribosomal protein L21 OS=Capra hircus GN=RPL21... [more]
RL21_MOUSE4.300e-3250.6960S ribosomal protein L21 OS=Mus musculus GN=Rpl21... [more]
RL21_RAT9.580e-3250.0060S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]
RL21_CAEEL2.360e-3051.0360S ribosomal protein L21 OS=Caenorhabditis elegan... [more]
RL21_PYUST8.967e-3049.6260S ribosomal protein L21 (Fragment) OS=Pyura stol... [more]
RL21_ENTHI1.295e-2846.8160S ribosomal protein L21 OS=Entamoeba histolytica... [more]
RL21_ENCCU2.794e-2350.0060S ribosomal protein L21 OS=Encephalitozoon cunic... [more]
RL21_SULTO8.432e-1246.0750S ribosomal protein L21e OS=Sulfolobus tokodaii ... [more]
RL21_PIG1.878e-1159.6260S ribosomal protein L21 (Fragment) OS=Sus scrofa... [more]
RL21_SULAC2.453e-1142.5350S ribosomal protein L21e OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionC08028D03SK PhyRootSw1 Citrus sinensis cDNA clone C08028D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306607 ID=CX306607; Name=CX306607; organism=Citrus sinensis; type=EST; length=742bp
GAGGAGTTGCTCTAAGACCACAAGAAGTACAGATCCAAGCGAACAAGAAA
CAGTGACAACACTGAAGGATACAGATAACGGAAGTCTGCATTTTTAGTTG
TTGTTTCATTTGCTTGGTATTCTAATTCAGAAACTTCTGTGTGGGAAAAT
AGAAAAGGTTAGCAGAGGCTTGTTGACAATGTTTTGAACAAACATTGGTT
CTAGAAATAAAGAATGATGAGGTTCTGATTTGCGAAAACAAAAAAAAAAA
AAAAAAANNNNNNNNNNNNNNNNNNNNNGGCACGAGGGCGATCCGGAGGT
TACCGAAGTAATACTAGAGATTTGTTTCAACAACCCTTTAGAAAAAGAGG
ACCCGTTAAATTATCAACTTACTTAGAAAACTATAAAATTGGAGACTATG
TTGATATTAAAGCTAACCCCTCCATTCACAAGGGTATGCCTCACAAATTT
TACCATGGTAAAACTGGTCGAGTTTGGAATGTAACTCCTCGAGCAATTGG
TGTTCAAATCAATAAACCTGTCGGAAACAGAATCATGAAAAAGCGAATTA
ATGTTAGAGTTGAACATATTCAAAAATCCAAGTGCCGAACTCACTTCTTA
GAACGACTTGTCGAAAACGAAAAGCACAAAGCTTTGGTTCGAGCTGGAAA
AGCCACCAAAAAAGTTCTCAAACGAGATCCTGGAACACCTAATCCCGCTA
AATTTGTTACAGGAAGCGAATCTCAAAATATTGCTCCCGCTC
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