CX303411

Overview
NameCX303411
Unique NameCX303411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.189e-17
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH  +W SHP+ YG+GSR CR C+++ GLIRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.189e-17
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H  +WN H +TYGKGSR CR+C +++GLIRKY L +CRQCF++ S ++GF KYR
Sbjct:    1 MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.200e-16
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            MGH  +WNSHPK YG GSR CRVC +  GLIRKY L  CRQCF+  + DIGF KYR
Sbjct:    1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.200e-16
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            MGH  +WNSHPK YG GSR CRVC +  GLIRKY L+ CRQCF+  + +IGF KYR
Sbjct:    1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.567e-16
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH  +W SHP+ YG+GSR CR C+++ GLIRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_RAT (40S ribosomal protein S29 OS=Rattus norvegicus GN=Rps29 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_PONAB (40S ribosomal protein S29 OS=Pongo abelii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_MOUSE (40S ribosomal protein S29 OS=Mus musculus GN=Rps29 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_ICTPU (40S ribosomal protein S29 OS=Ictalurus punctatus GN=rps29 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_HUMAN (40S ribosomal protein S29 OS=Homo sapiens GN=RPS29 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
The following BLAST results are available for this feature:
BLAST of CX303411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_PLUXY9.189e-1761.1140S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_GUITH9.189e-1758.9340S ribosomal protein S29A OS=Guillardia theta GN=... [more]
RS29_WHEAT1.200e-1666.0740S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_ARATH1.200e-1664.2940S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_SPOFR1.567e-1661.1140S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_RAT2.047e-1664.8140S ribosomal protein S29 OS=Rattus norvegicus GN=... [more]
RS29_PONAB2.047e-1664.8140S ribosomal protein S29 OS=Pongo abelii GN=RPS29... [more]
RS29_MOUSE2.047e-1664.8140S ribosomal protein S29 OS=Mus musculus GN=Rps29... [more]
RS29_ICTPU2.047e-1664.8140S ribosomal protein S29 OS=Ictalurus punctatus G... [more]
RS29_HUMAN2.047e-1664.8140S ribosomal protein S29 OS=Homo sapiens GN=RPS29... [more]

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Properties
Property NameValue
Genbank descriptionC08030H11SK PhyRootSw1 Citrus sinensis cDNA clone C08030H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303411 ID=CX303411; Name=CX303411; organism=Citrus sinensis; type=EST; length=199bp
CAACATGGGCCACGATCAGCTTTGGAACTCCCACCCCAAGACCTACGGAA
AGGGCTCCCGCCAGTGCCGTGTCTGCGCCCACAAGGCCGGTCTCATTCGC
AAGTACCACCTCGATCTTTGCAGGCAGTGCTTCAAGCAGTACTCTGGTGA
CATTGGTTTCCACAAGTACCGCTAATTGTTCCATCTACGTTTCAATTTG
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