CX303411

Overview
NameCX303411
Unique NameCX303411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_HIPCM (40S ribosomal protein S29 OS=Hippocampus comes GN=rps29 PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_BOVIN (40S ribosomal protein S29 OS=Bos taurus GN=RPS29 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.047e-16
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH QL+ SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_LYSTE (40S ribosomal protein S29 OS=Lysiphlebus testaceipes GN=RpS29 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.673e-16
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MG + +W SHP+ YG+GSR CR CA+K G+IRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGFENIWFSHPRKYGQGSRSCRSCANKHGIIRKYGLNICRQCFREYASDIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.673e-16
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH  +W SHP+ YG+GSR CR C+++ GLIRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.733e-15
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MGH  +W SHP+ Y +GSR CR C+++ GLIRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_DROME (40S ribosomal protein S29 OS=Drosophila melanogaster GN=RpS29 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.733e-15
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MG   LW SHP+ YG+GSR CR C+++ GLIRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_CULQU (40S ribosomal protein S29 OS=Culex quinquefasciatus GN=RpS29 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.042e-15
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MG   LW SHP+ YG+GSR CR C++  G+IRKY L++CRQCF++Y+ DIGF K
Sbjct:    1 MGFADLWYSHPRKYGQGSRFCRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_PIG (40S ribosomal protein S29 OS=Sus scrofa GN=RPS29 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHK 166
            MG    + SHP+ +G+GSR CRVC+++ GLIRKY L++CRQCF+QY+ DIGF K
Sbjct:    1 MGPQGFYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_KLULA (40S ribosomal protein S29 OS=Kluyveromyces lactis GN=RPS29 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ +GKGSRQCR+    +GLIRKY L++ RQ F++ + DIGF+KYR
Sbjct:    1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56          
BLAST of CX303411 vs. ExPASy Swiss-Prot
Match: RS29_SCHPO (40S ribosomal protein S29 OS=Schizosaccharomyces pombe GN=rps29 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.281e-14
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 2
Query:    5 MGHDQLWNSHPKTYGKGSRQCRVCAHKAGLIRKYHLDLCRQCFKQYSGDIGFHKYR 172
            M H+ +W SHP+ YGKGSRQC     + GLIRKY L++ RQ F++Y+ DIGF KYR
Sbjct:    1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVKYR 56          
The following BLAST results are available for this feature:
BLAST of CX303411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_HIPCM2.047e-1664.8140S ribosomal protein S29 OS=Hippocampus comes GN=... [more]
RS29_BOVIN2.047e-1664.8140S ribosomal protein S29 OS=Bos taurus GN=RPS29 P... [more]
RS29_LYSTE2.673e-1661.1140S ribosomal protein S29 OS=Lysiphlebus testaceip... [more]
RS29_BOMMO2.673e-1661.1140S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_LONON1.733e-1559.2640S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]
RS29_DROME1.733e-1561.1140S ribosomal protein S29 OS=Drosophila melanogast... [more]
RS29_CULQU5.042e-1559.2640S ribosomal protein S29 OS=Culex quinquefasciatu... [more]
RS29_PIG5.575e-1459.2640S ribosomal protein S29 OS=Sus scrofa GN=RPS29 P... [more]
RS29_KLULA5.575e-1455.3640S ribosomal protein S29 OS=Kluyveromyces lactis ... [more]
RS29_SCHPO7.281e-1457.1440S ribosomal protein S29 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC08030H11SK PhyRootSw1 Citrus sinensis cDNA clone C08030H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303411 ID=CX303411; Name=CX303411; organism=Citrus sinensis; type=EST; length=199bp
CAACATGGGCCACGATCAGCTTTGGAACTCCCACCCCAAGACCTACGGAA
AGGGCTCCCGCCAGTGCCGTGTCTGCGCCCACAAGGCCGGTCTCATTCGC
AAGTACCACCTCGATCTTTGCAGGCAGTGCTTCAAGCAGTACTCTGGTGA
CATTGGTTTCCACAAGTACCGCTAATTGTTCCATCTACGTTTCAATTTG
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