CX303408

Overview
NameCX303408
Unique NameCX303408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6220 contig Csv1_Contig6220:8..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM2_HUMAN (Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.475e-61
Identity = 113/182 (62.09%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            L LFDVDGTLTAPR+  T +M +F+++LR+ + +GVVGGSD  K+ EQLG  V+++YDYVF ENGLVA+KDGKL+  Q+++S LG   +++ IN+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+CSQEER EF   DK  NIR K V+ LR++FA   LTFSIGGQISFDVFP GWD+
Sbjct:    8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDK 189          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM2_MACFA (Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM2 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.845e-61
Identity = 113/182 (62.09%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            L LFDVDGTLTAPR+  T +M +F+++LR+ + +GVVGGSD  K+ EQLG  V+++YDYVF ENGLVA+KDGKL+  Q+++S LG   +++ IN+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+CSQEER EF   DK  NIR K V+ LR++FA   LTFSIGGQISFDVFP GWD+
Sbjct:    8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCKQNIQSHLGEALIQDLINYCLSYIAKVKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDK 189          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM2_MOUSE (Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.145e-59
Identity = 109/182 (59.89%), Postives = 143/182 (78.57%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            L LFD+DGTLTAPR+  T +M  F+++LR+   +GVVGGSD  K+ EQLG  V+++YDYVF ENGLVA+KDGKL+  Q+++  LG + +++ IN+ L YIA++ +P KRGTFIEFR+GMLN+SPIGR+CSQEER EF   DK  +IR K V+ LR++FA   LTFSIGGQIS DVFP+GWD+
Sbjct:    4 LCLFDMDGTLTAPRQKITEEMDGFLQKLRQKTKIGVVGGSDFEKLQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCKQNIQGHLGEDVIQDLINYCLSYIANIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEFAGKGLTFSIGGQISIDVFPEGWDK 185          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM2_BOVIN (Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.079e-58
Identity = 111/182 (60.99%), Postives = 139/182 (76.37%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            L LFDVDGTLTAPR+  T  M  F+++LR+ + +GVVGGSD  K+ EQLG  VI +YDYVF ENGLVA++DGKL+  Q+++  LG   +++ IN+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+CSQEER EF   D+  NIR K V  LR++FA   LTFSIGGQISFDVFP GWD+
Sbjct:    8 LCLFDVDGTLTAPRQKITKDMDCFLQKLRQKIKIGVVGGSDFEKVQEQLGDDVIKKYDYVFPENGLVAYRDGKLLCKQNIQGHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDQKENIRQKFVEDLRKEFAGKGLTFSIGGQISFDVFPDGWDK 189          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_DROME (Probable phosphomannomutase OS=Drosophila melanogaster GN=CG10688 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.688e-57
Identity = 104/194 (53.61%), Postives = 144/194 (74.23%), Query Frame = 3
Query:  156 TPMAARKQGLLALFDVDGTLTAPRKAATPQMLEFM-RELRKVVTVGVVGGSDLSKISEQL-GKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            T  A ++  +L LFDVDGTLT PR   TP+  EF    ++   T+G+VGGSDL K+ EQL G+ +++E+D++F ENGLV  + GK +G Q++   LG E +K FINF L Y+++LD+PIKRGTFIEFR+GM+N+ PIGR C++EER+ F  YD  H +R KM+  L+++FA ++LT+SIGGQISFDVFP GWD+
Sbjct:    2 TTAALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVGGSDLEKMFEQLNGRKILNEFDFIFPENGLVQIEGGKEVGKQNIIMHLGEETVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDK 195          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_CANAL (Phosphomannomutase OS=Candida albicans GN=PMM1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.657e-56
Identity = 100/182 (54.95%), Postives = 139/182 (76.37%), Query Frame = 3
Query:  186 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            L LFDVDGTLT  R   + +M + + +LR+ V +G VGGSDLSK  EQLG  V++++DY FSENGL A+K GK + +QS  +++G EK  + + F L Y++D+D+PI+RGTFIEFR+GM+N+SPIGRN S +ER+++E++DK H+IR  MV  L+++F    LT+SIGGQISFDVFP GWD+
Sbjct:   12 LVLFDVDGTLTPARLTISEEMKKTLEKLREKVVIGFVGGSDLSKQVEQLGPNVLNDFDYCFSENGLTAYKLGKELASQSFINWIGNEKYNKLVKFILRYLSDIDLPIRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEFPDFGLTYSIGGQISFDVFPTGWDK 193          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_YEAST (Phosphomannomutase OS=Saccharomyces cerevisiae GN=SEC53 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.175e-55
Identity = 104/186 (55.91%), Postives = 135/186 (72.58%), Query Frame = 3
Query:  174 KQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            K   L LFDVDGTLT  R   + ++ + + +LR    +G VGGSDLSK  EQLG  V+DE+DY FSENGL A++ GK + +QS  ++LG EK  +   F L Y++++D+P +RGTF+EFR+GM+N+SPIGRN S EER+EFERYDK H IR K V  L+++F    LTFSIGGQISFDVFP GWD+
Sbjct:   11 KPETLVLFDVDGTLTPARLTVSEEVRKTLAKLRNKCCIGFVGGSDLSKQLEQLGPNVLDEFDYSFSENGLTAYRLGKELASQSFINWLGEEKYNKLAVFILRYLSEIDLPKRRGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQIRAKFVEALKKEFPDYGLTFSIGGQISFDVFPAGWDK 196          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM1_MOUSE (Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.394e-54
Identity = 108/197 (54.82%), Postives = 143/197 (72.59%), Query Frame = 3
Query:  165 AARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGK--TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDRHTA*DT 749
            A RK+ +L LFDVDGTLT  R+   P++  F+++LR  V +GVVGGSD SKI+EQLG+   VI+++DYVF+ENG V +K G+L+  Q++++ LG E L++ INF L Y+A L +P KRGTFIEFR+GMLN+SPIGR+C+ EER EF   DK   IR K V  L+ +FA   L FS GG ISFDVFP+GWD+    D+
Sbjct:    8 ARRKERILCLFDVDGTLTPARQKIDPEVSAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDS 204          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM1_HUMAN (Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 6.920e-54
Identity = 108/197 (54.82%), Postives = 141/197 (71.57%), Query Frame = 3
Query:  165 AARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGK--TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDRHTA*DT 749
            A RK+ +L LFDVDGTLT  R+   P++  F+++LR  V +GVVGGSD  KI+EQLG    VI+++DYVF+ENG V +K G+L+  Q++++ LG E L++ INF L Y+A L +P KRGTFIEFR+GMLNISPIGR+C+ EER EF   DK   IR K V  L+ +FA   L FS GG ISFDVFP+GWD+    D+
Sbjct:    8 ARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAEQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDS 204          
BLAST of CX303408 vs. ExPASy Swiss-Prot
Match: PMM_ENCCU (Phosphomannomutase OS=Encephalitozoon cuniculi GN=SEC53 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.728e-49
Identity = 94/188 (50.00%), Postives = 128/188 (68.09%), Query Frame = 3
Query:  168 ARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDR 731
            AR +  + LFDVDGTL+  R     +M + +  LR+ V +G VGGSDL+K  EQ+G  +++ +DY F ENG+  +K+G L   + +   LG E  KEF NF L Y++D+D+PIKRG FIE+R+ M+NISPIGRNCS+EER +F   DK    R KMV+ +R++F    L FSIGGQIS D FP+GWD+
Sbjct:    2 ARDEKTIFLFDVDGTLSESRAKMPEKMGKMLESLRRKVRIGFVGGSDLAKQKEQVGDNILEIFDYGFPENGVSFYKNGTLESQEKIIDVLGEEFYKEFANFVLRYLSDIDLPIKRGNFIEYRNSMINISPIGRNCSREERMKFFELDKKEKFREKMVTAMRDRFKDSCLVFSIGGQISIDCFPKGWDK 189          

HSP 2 Score: 21.9422 bits (45), Expect = 9.728e-49
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  707 CVSPGMGQTYCLRYL 751
            C   G  +TYCLR++
Sbjct:  182 CFPKGWDKTYCLRHI 196          
The following BLAST results are available for this feature:
BLAST of CX303408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM2_HUMAN4.475e-6162.09Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 ... [more]
PMM2_MACFA5.845e-6162.09Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM... [more]
PMM2_MOUSE7.145e-5959.89Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 ... [more]
PMM2_BOVIN2.079e-5860.99Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV... [more]
PMM_DROME6.688e-5753.61Probable phosphomannomutase OS=Drosophila melanoga... [more]
PMM_CANAL9.657e-5654.95Phosphomannomutase OS=Candida albicans GN=PMM1 PE=... [more]
PMM_YEAST8.175e-5555.91Phosphomannomutase OS=Saccharomyces cerevisiae GN=... [more]
PMM1_MOUSE1.394e-5454.82Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 ... [more]
PMM1_HUMAN6.920e-5454.82Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 ... [more]
PMM_ENCCU9.728e-4950.00Phosphomannomutase OS=Encephalitozoon cuniculi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08030H08SK PhyRootSw1 Citrus sinensis cDNA clone C08030H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303408 ID=CX303408; Name=CX303408; organism=Citrus sinensis; type=EST; length=751bp
ACGAGGGAATCAATTACTTCCCCGTAACTTCCCAGCTTCCGCCATTCAAG
ATTTCAAGATCAAGATCTGCTTTAAATTCCGCGTCCAAATTCAAAGCTCT
GCGCTCTACTCACGCTATTCATTCACTTCTATTCAGATAAATCTATACAT
TTCAAACTCCAATGGCTGCTAGGAAGCAAGGTTTATTAGCTCTCTTTGAT
GTTGACGGAACTCTCACGGCTCCGAGAAAGGCGGCAACACCACAAATGTT
AGAGTTCATGCGGGAACTGAGAAAGGTTGTTACAGTTGGAGTCGTCGGTG
GATCTGATCTTTCTAAGATATCAGAGCAGCTTGGGAAGACAGTTATTGAT
GAATACGATTATGTGTTTTCTGAGAATGGTCTTGTGGCTCATAAGGATGG
GAAATTAATTGGCACACAGAGCTTGAAATCATTTCTTGGAGGCGAAAAGC
TCAAGGAATTCATAAATTTTACTCTTCATTACATTGCTGACTTGGACATT
CCAATTAAAAGGGGAACTTTCATTGAATTCCGAAGTGGGATGCTTAATAT
TTCACCAATTGGGCGAAACTGCAGCCAAGAAGAAAGGGACGAGTTTGAGA
GGTATGACAAGATTCACAATATACGGCCAAAAATGGTATCTGTGCTTCGG
GAGAAGTTTGCTCACCTTAACTTGACATTTTCAATTGGAGGACAGATAAG
CTTTGATGTGTTTCCCCAGGGATGGGACAGACATACTGCTTGAGATACCT
T
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