CX303406

Overview
NameCX303406
Unique NameCX303406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUMB (50S ribosomal protein L24 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG++G+VL ++ K+ +A++ G+N+  R      +   G  I +   IH SN+ + DP D KPT++  R   DG KVRV+KR+G +I
Sbjct:    4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRVGFR-VEDGKKVRVAKRSGALI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUC2 (50S ribosomal protein L24 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG++G+VL ++ K+ +A++ G+N+  R      +   G  I +   IH SN+ + DP D KPT++  R   DG KVRV+KR+G +I
Sbjct:    4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRVGFR-VEDGKKVRVAKRSGALI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUAB (50S ribosomal protein L24 OS=Brucella abortus GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG++G+VL ++ K+ +A++ G+N+  R      +   G  I +   IH SN+ + DP D KPT++  R   DG KVRV+KR+G +I
Sbjct:    4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRVGFR-VEDGKKVRVAKRSGALI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUA2 (50S ribosomal protein L24 OS=Brucella abortus (strain 2308) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG++G+VL ++ K+ +A++ G+N+  R      +   G  I +   IH SN+ + DP D KPT++  R   DG KVRV+KR+G +I
Sbjct:    4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRVGFR-VEDGKKVRVAKRSGALI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUA1 (50S ribosomal protein L24 OS=Brucella abortus (strain S19) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG++G+VL ++ K+ +A++ G+N+  R      +   G  I +   IH SN+ + DP D KPT++  R   DG KVRV+KR+G +I
Sbjct:    4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRVGFR-VEDGKKVRVAKRSGALI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BACWK (50S ribosomal protein L24 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 36/103 (34.95%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            ++ KGD V+V  G  KG++G +L    K +R I+EGVN+  +          G  I +   IH SN+M++DP   +PT++  +   DG KVR++K++G ++ K
Sbjct:    2 HVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKEAPIHVSNVMVLDPKTGEPTRVGFK-VEDGKKVRIAKKSGELLDK 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_PARD8 (50S ribosomal protein L24 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V V  G  KG+ G+VL ++ K++RAI+EG+N+  +          G    +   IH SN+ ++DP   K T+I R+    G  VR SK++G  I
Sbjct:    5 HIKKGDIVFVNAGEDKGKTGRVLQVLVKDNRAIVEGINVVSKHTKPNAKNPQGGIEKKEAPIHLSNLNVVDPKSGKATRIGRKLNEKGALVRYSKKSGEEI 105          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORU7 (50S ribosomal protein L24 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I KGD V V  GP KG +GKV+    K  + ++EGVN   + V N         G  + +   IH SN+M+ID SD  PT+I  R+  DG K+RVSKR G
Sbjct:    3 IRKGDTVIVISGPDKGAKGKVIEAYPKRDKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-SDGNPTRIGYRF-EDGKKIRVSKRNG 100          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BARQU (50S ribosomal protein L24 OS=Bartonella quintana GN=rplX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG  G+V+ +  K ++A + GVNM     R    + +G+  K       IH SN+ + DP D KPT++  R   DG KVR +KR+G +I
Sbjct:    4 IRKGDKVVVLSGKDKGCSGEVIKVNPKENKAFVRGVNMVKRHQRQTQKQEAGIVSKE----APIHLSNLAIADPKDGKPTRVGFRMNVDGNKVRFAKRSGELI 102          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICBR (50S ribosomal protein L24 OS=Rickettsia bellii (strain RML369-C) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            + KGD V V  G  KG++GK+L +  + ++ ++ G+N+ +  T   ++S   G  I +   I  SN+  +DP    PTK+A ++  DG+KVR++K++G II K
Sbjct:    6 VKKGDEVIVITGKYKGKKGKILKVFPEQNKIVVSGINLVKKHTKPTKVS--EGGIITKELPIDISNVAHVDPKTGNPTKVAFKFLEDGSKVRIAKKSGEIIGK 106          
The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
RL24_BRUMB3.932e-1240.0050S ribosomal protein L24 OS=Brucella melitensis b... [more]
RL24_BRUC23.932e-1240.0050S ribosomal protein L24 OS=Brucella canis (strai... [more]
RL24_BRUAB3.932e-1240.0050S ribosomal protein L24 OS=Brucella abortus GN=r... [more]
RL24_BRUA23.932e-1240.0050S ribosomal protein L24 OS=Brucella abortus (str... [more]
RL24_BRUA13.932e-1240.0050S ribosomal protein L24 OS=Brucella abortus (str... [more]
RL24_BACWK3.932e-1234.9550S ribosomal protein L24 OS=Bacillus weihenstepha... [more]
RL24_PARD85.136e-1236.6350S ribosomal protein L24 OS=Parabacteroides dista... [more]
RL24_CORU75.136e-1243.0050S ribosomal protein L24 OS=Corynebacterium ureal... [more]
RL24_BARQU5.136e-1238.8350S ribosomal protein L24 OS=Bartonella quintana G... [more]
RL24_RICBR6.707e-1234.9550S ribosomal protein L24 OS=Rickettsia bellii (st... [more]

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Properties
Property NameValue
Genbank descriptionC08030H06SK PhyRootSw1 Citrus sinensis cDNA clone C08030H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGCTTGATGTATCACAACGTTGG
AACATTGTGAAGGGTGATTTTGTTGAAGTCACCCAAGGTCCACAGAAAGG
GCAAAGGGGAAAAGTTCTTGCAATTATCCGTAAGAATAGTCGTGCAATCA
TAGAGGGAGTCAATATGCGTCCTCGTACTGTTATCAATCGGATCAGTGGT
GTTCCTGGCAAAACTATTATTCGACCTTGCTCTATTCATTACTCAAATAT
GATGTTGATCGATCCTTCAGACAGTAAACCTACAAAAATTGCCCGAAGAT
GGACTGCCGATGGTACCAAGGTCCGAGTATCAAAAAGAACTGGTCATATT
ATCCCGAAACCTGATTTTTCTGCCTTTCGAAGGCCACGCACTAAAGCACT
CGGTCAAAAGGATACTCCAGCAGATGAAGTTGTGAAAGTCACGTTTTCTG
AGTACGCAATGTATCTTCCTTATATCTACGCGAGAGCCAATATTGAAGGC
AAGAGCATTGAAGTGATCAATAATGACCAAAAATAAATCATAACTTTGTT
CGTCCTTGTAAATTCACCAAAACTTTT
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