CX303406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_GRABC (50S ribosomal protein L24 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplX PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14 Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG+RG+VL +I + +RA++ GV + R + R G PG + + SN+ML+DP KPT++ R +G KVRV+K TG +I Sbjct: 5 IRKGDQVVVISGEDKGKRGEVLRVIPRENRAVVRGVAVAKRHLKPRGMGQPGGIQEQEAPVAISNLMLVDPKSDKPTRVGFRILDNGNKVRVAKVTGQVI 104
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICM5 (50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) GN=rplX PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14 Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 + KGD V V G KG++GK+L + ++S+ I+ GVN+ + T N++S G I + IH SN+ IDP PTK+A ++ DG+KVRV+K++G II K Sbjct: 6 VKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVFGVNLVKKHTKSNQMS--EGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSGEIIGK 106
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BACV8 (50S ribosomal protein L24 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplX PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14 Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADG-TKVRVSKRTGHII 353 +I KGD V V G KG+ G+VL ++ K RA++EG+NM ++ G + + +IH SN+ L+DP KPT++ RR ++DG T VR +K++G I Sbjct: 5 HIKKGDTVYVNSGEDKGKTGRVLKVLVKEGRALVEGINMVSKSTKPNAKNPQGGIVKQEAAIHISNLNLVDPKTGKPTRVGRRESSDGRTFVRYAKKSGEEI 106
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_FRASC (50S ribosomal protein L24 OS=Frankia sp. (strain CcI3) GN=rplX PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14 Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 I KGD V++ G +G +GKV+ + ++ ++EG N R G I + IH SN+M++DPSD KPT+I R DGTKVRVS+RTG Sbjct: 6 IKKGDTVQIITGKDRGLKGKVIRAYPEQNKVLVEGANRITRHTRVQQGTRGSQSGGIITQEAPIHVSNVMIVDPSDGKPTRIGYRINDDGTKVRVSRRTG 105
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_GLUDA (50S ribosomal protein L24 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplX PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG RG+VL++ +++A++ GV + R G G I + IH SN+ L+DP KPT++ R DG KVRV+K TG ++ Sbjct: 6 IKKGDQVVVITGSSKGSRGEVLSVRPDDNKAVVRGVAVAKRHTRPNRMGEQGGIIEKEMPIHLSNLKLVDPKSGKPTRVGFRILEDGRKVRVAKATGEVV 105
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_FRAAA (50S ribosomal protein L24 OS=Frankia alni (strain ACN14a) GN=rplX PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14 Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 I KGD V++ G +G +GKV+ + ++ ++EG N R + G + + IH SN+M++DPSD +PT+I R DGTKVR+S+RTG Sbjct: 8 IKKGDTVQIITGKDRGLKGKVIRAYPEQNKVLVEGANRITRHTRVQQSARGSQSGGIVTQEAPIHVSNVMIVDPSDGRPTRIGYRINEDGTKVRISRRTG 107
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_THENN (50S ribosomal protein L24 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplX PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 45 RWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 R I KGD VEV G KG+RGKVL ++ K + I+EGVNM R G I R I+ +M++ P+ K T++ R+T DG KVR K+ G II K Sbjct: 2 RMRIKKGDLVEVISGKDKGKRGKVLRVLPKEDKVIVEGVNMVKRHQRPIPQLREGGIIEREAPIYACKVMVVCPACDKRTRVGYRFTEDGKKVRYCKKCGEIIDK 106
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_MESSB (50S ribosomal protein L24 OS=Mesorhizobium sp. (strain BNC1) GN=rplX PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG+ G+VL ++ K RA++ GVN+ R + G I + IH SN+ L DP D KPT++ + DG KVRV+KR+G +I Sbjct: 4 IKKGDKVVVLSGRDKGRTGEVLKMMPKEDRALVRGVNLVRRHQ-KQTPQAEGGIITKEAPIHVSNLALADPKDGKPTRVGFKIQEDGKKVRVAKRSGELI 102
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICPR (50S ribosomal protein L24 OS=Rickettsia prowazekii GN=rplX PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13 Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 + KGD V + G KG++GKVL + + + ++ GVN+ + T N++S G I + IH SN+ IDP PTK+A ++ DG+KVRV+K++G II K Sbjct: 6 VKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMS--EGGIITQESPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSGEIIGK 106
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BACFR (50S ribosomal protein L24 OS=Bacteroides fragilis GN=rplX PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V V G KG+ G+VL ++ K RAI+EG+NM ++ G + + IH SN+ +DP K T++ R+ +++GT VR SK++G I Sbjct: 5 HIKKGDTVYVNAGEDKGKTGRVLKVLVKEGRAIVEGINMVSKSTKPNAKNPQGGIVKQEAPIHISNLNPVDPKTGKATRVGRKVSSEGTLVRYSKKSGEEI 105 The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 163
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Sequences
The
following sequences are available for this feature:
EST sequence >CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bpback to top |