CX303406

Overview
NameCX303406
Unique NameCX303406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_GRABC (50S ribosomal protein L24 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplX PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.886e-14
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG+RG+VL +I + +RA++ GV +  R +  R  G PG    +   +  SN+ML+DP   KPT++  R   +G KVRV+K TG +I
Sbjct:    5 IRKGDQVVVISGEDKGKRGEVLRVIPRENRAVVRGVAVAKRHLKPRGMGQPGGIQEQEAPVAISNLMLVDPKSDKPTRVGFRILDNGNKVRVAKVTGQVI 104          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICM5 (50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) GN=rplX PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            + KGD V V  G  KG++GK+L +  ++S+ I+ GVN+ +  T  N++S   G  I +   IH SN+  IDP    PTK+A ++  DG+KVRV+K++G II K
Sbjct:    6 VKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVFGVNLVKKHTKSNQMS--EGGIITKELPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSGEIIGK 106          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BACV8 (50S ribosomal protein L24 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplX PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADG-TKVRVSKRTGHII 353
            +I KGD V V  G  KG+ G+VL ++ K  RA++EG+NM  ++         G  + +  +IH SN+ L+DP   KPT++ RR ++DG T VR +K++G  I
Sbjct:    5 HIKKGDTVYVNSGEDKGKTGRVLKVLVKEGRALVEGINMVSKSTKPNAKNPQGGIVKQEAAIHISNLNLVDPKTGKPTRVGRRESSDGRTFVRYAKKSGEEI 106          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_FRASC (50S ribosomal protein L24 OS=Frankia sp. (strain CcI3) GN=rplX PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I KGD V++  G  +G +GKV+    + ++ ++EG N      R          G  I +   IH SN+M++DPSD KPT+I  R   DGTKVRVS+RTG
Sbjct:    6 IKKGDTVQIITGKDRGLKGKVIRAYPEQNKVLVEGANRITRHTRVQQGTRGSQSGGIITQEAPIHVSNVMIVDPSDGKPTRIGYRINDDGTKVRVSRRTG 105          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_GLUDA (50S ribosomal protein L24 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG RG+VL++   +++A++ GV +  R       G  G  I +   IH SN+ L+DP   KPT++  R   DG KVRV+K TG ++
Sbjct:    6 IKKGDQVVVITGSSKGSRGEVLSVRPDDNKAVVRGVAVAKRHTRPNRMGEQGGIIEKEMPIHLSNLKLVDPKSGKPTRVGFRILEDGRKVRVAKATGEVV 105          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_FRAAA (50S ribosomal protein L24 OS=Frankia alni (strain ACN14a) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I KGD V++  G  +G +GKV+    + ++ ++EG N      R   +      G  + +   IH SN+M++DPSD +PT+I  R   DGTKVR+S+RTG
Sbjct:    8 IKKGDTVQIITGKDRGLKGKVIRAYPEQNKVLVEGANRITRHTRVQQSARGSQSGGIVTQEAPIHVSNVMIVDPSDGRPTRIGYRINEDGTKVRISRRTG 107          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_THENN (50S ribosomal protein L24 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   45 RWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            R  I KGD VEV  G  KG+RGKVL ++ K  + I+EGVNM  R          G  I R   I+   +M++ P+  K T++  R+T DG KVR  K+ G II K
Sbjct:    2 RMRIKKGDLVEVISGKDKGKRGKVLRVLPKEDKVIVEGVNMVKRHQRPIPQLREGGIIEREAPIYACKVMVVCPACDKRTRVGYRFTEDGKKVRYCKKCGEIIDK 106          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_MESSB (50S ribosomal protein L24 OS=Mesorhizobium sp. (strain BNC1) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG+ G+VL ++ K  RA++ GVN+  R    +     G  I +   IH SN+ L DP D KPT++  +   DG KVRV+KR+G +I
Sbjct:    4 IKKGDKVVVLSGRDKGRTGEVLKMMPKEDRALVRGVNLVRRHQ-KQTPQAEGGIITKEAPIHVSNLALADPKDGKPTRVGFKIQEDGKKVRVAKRSGELI 102          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RICPR (50S ribosomal protein L24 OS=Rickettsia prowazekii GN=rplX PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM-RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            + KGD V +  G  KG++GKVL +  + +  ++ GVN+ +  T  N++S   G  I +   IH SN+  IDP    PTK+A ++  DG+KVRV+K++G II K
Sbjct:    6 VKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMS--EGGIITQESPIHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSGEIIGK 106          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BACFR (50S ribosomal protein L24 OS=Bacteroides fragilis GN=rplX PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V V  G  KG+ G+VL ++ K  RAI+EG+NM  ++         G  + +   IH SN+  +DP   K T++ R+ +++GT VR SK++G  I
Sbjct:    5 HIKKGDTVYVNAGEDKGKTGRVLKVLVKEGRAIVEGINMVSKSTKPNAKNPQGGIVKQEAPIHISNLNPVDPKTGKATRVGRKVSSEGTLVRYSKKSGEEI 105          
The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
RL24_GRABC1.886e-1442.0050S ribosomal protein L24 OS=Granulibacter bethesd... [more]
RL24_RICM52.463e-1441.7550S ribosomal protein L24 OS=Rickettsia massiliae ... [more]
RL24_BACV82.463e-1439.2250S ribosomal protein L24 OS=Bacteroides vulgatus ... [more]
RL24_FRASC4.201e-1441.0050S ribosomal protein L24 OS=Frankia sp. (strain C... [more]
RL24_GLUDA9.359e-1440.0050S ribosomal protein L24 OS=Gluconacetobacter dia... [more]
RL24_FRAAA9.359e-1438.0050S ribosomal protein L24 OS=Frankia alni (strain ... [more]
RL24_THENN1.222e-1341.9050S ribosomal protein L24 OS=Thermotoga neapolitan... [more]
RL24_MESSB1.222e-1342.0050S ribosomal protein L24 OS=Mesorhizobium sp. (st... [more]
RL24_RICPR1.596e-1339.8150S ribosomal protein L24 OS=Rickettsia prowazekii... [more]
RL24_BACFR1.596e-1337.6250S ribosomal protein L24 OS=Bacteroides fragilis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08030H06SK PhyRootSw1 Citrus sinensis cDNA clone C08030H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGCTTGATGTATCACAACGTTGG
AACATTGTGAAGGGTGATTTTGTTGAAGTCACCCAAGGTCCACAGAAAGG
GCAAAGGGGAAAAGTTCTTGCAATTATCCGTAAGAATAGTCGTGCAATCA
TAGAGGGAGTCAATATGCGTCCTCGTACTGTTATCAATCGGATCAGTGGT
GTTCCTGGCAAAACTATTATTCGACCTTGCTCTATTCATTACTCAAATAT
GATGTTGATCGATCCTTCAGACAGTAAACCTACAAAAATTGCCCGAAGAT
GGACTGCCGATGGTACCAAGGTCCGAGTATCAAAAAGAACTGGTCATATT
ATCCCGAAACCTGATTTTTCTGCCTTTCGAAGGCCACGCACTAAAGCACT
CGGTCAAAAGGATACTCCAGCAGATGAAGTTGTGAAAGTCACGTTTTCTG
AGTACGCAATGTATCTTCCTTATATCTACGCGAGAGCCAATATTGAAGGC
AAGAGCATTGAAGTGATCAATAATGACCAAAAATAAATCATAACTTTGTT
CGTCCTTGTAAATTCACCAAAACTTTT
back to top