CX303406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_DEIGD (50S ribosomal protein L24 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplX PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13 Identity = 39/115 (33.91%), Postives = 67/115 (58.26%), Query Frame = 3 Query: 9 VPNSARGLDVSQRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +P + G + + ++ KGD V V +G KGQ GKVL + ++++ ++EGVN+ + V + G R ++H S + L+DP KPT++ R+ DG KVRV+ ++G +I Sbjct: 1 MPRPSAGSHHNDKLHVKKGDTVIVLRGKHKGQTGKVLLALPRDAKVVVEGVNLVTKHVKPSAANPQGGIEQREAALHASKVALVDPETGKPTRV-RKAIVDGKKVRVAVKSGKVI 114
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_THEEB (50S ribosomal protein L24 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplX PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13 Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3 Query: 36 VSQRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 V R ++ KGD V+V G K + G+VLA+ K S+ I++GVN++ + + R G G+ I + IH +ML + ++I +T DG KVR+ K+TG II Sbjct: 11 VRYRMHVKKGDTVQVIAGSDKAKVGEVLAVFPKTSQVIVKGVNLKTKHLKPRQEGESGQIITKEAPIHSCKVMLYSTKQNVASRICYTYTEDGRKVRMLKKTGEII 116
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORJK (50S ribosomal protein L24 OS=Corynebacterium jeikeium (strain K411) GN=rplX PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 I KGD V V GP KG +GKV+ + + ++EGVN + V N G + + IH SN+M++D SD PT+I R+ DG K+RVSKR G Sbjct: 3 IRKGDTVLVISGPDKGAKGKVIEAYPQRDKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVVD-SDGNPTRIGYRFDEDGKKIRVSKRNG 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORGL (50S ribosomal protein L24 OS=Corynebacterium glutamicum GN=rplX PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3 Query: 60 KGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 KGD V V GP KG +G+V+A K + ++EGVN + V N G + + IH SN+M+ID SD PT++ R+ +G KVRVS+R G Sbjct: 5 KGDMVLVISGPDKGAKGQVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-SDGNPTRVGYRFDENGKKVRVSRRNG 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORGB (50S ribosomal protein L24 OS=Corynebacterium glutamicum (strain R) GN=rplX PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3 Query: 60 KGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 KGD V V GP KG +G+V+A K + ++EGVN + V N G + + IH SN+M+ID SD PT++ R+ +G KVRVS+R G Sbjct: 5 KGDMVLVISGPDKGAKGQVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-SDGNPTRVGYRFDENGKKVRVSRRNG 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_ANOFW (50S ribosomal protein L24 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplX PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 ++ KGD V+V G KG++G +LA K +R ++EGVN+ + V + G I + IH SN+M +DP PT++ + DG KVR +KR+G I+ K Sbjct: 2 HVKKGDKVQVISGKDKGKQGVILAAFPKKNRVLVEGVNIVKKHVKPSQANPQGGIINQEAPIHVSNVMPLDPKTGLPTRVGYK-VVDGKKVRYAKRSGEILDK 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RUBXD (50S ribosomal protein L24 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplX PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIR-PCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 I +GD V V G +KG+RG+V ++ + +R +++GVN R R R S + R IH SN+ML+DP+ +PT++ R+T G KVRV+KR+G Sbjct: 5 IKRGDTVVVISGREKGKRGEVERVLPRENRVVVKGVNTRTRHA--RPSQQNPDGLYRFDAPIHISNVMLVDPNTGEPTRVGYRFTESGQKVRVAKRSG 100
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_PORGI (50S ribosomal protein L24 OS=Porphyromonas gingivalis GN=rplX PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V V G KG G+VL ++ K RAI+EG+NM + G I + IH SN+ ++DP K T+I RR +G VR +K++G I Sbjct: 5 HIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEI 105
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_PORG3 (50S ribosomal protein L24 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rplX PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V V G KG G+VL ++ K RAI+EG+NM + G I + IH SN+ ++DP K T+I RR +G VR +K++G I Sbjct: 5 HIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEI 105
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_MAGSA (50S ribosomal protein L24 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplX PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 N+ KGD V V G KG++G+V+A + R I++GVN+ R + G + + SIH SN+ DP D K T+I + DG KVRV++R+G +I + Sbjct: 5 NVKKGDRVVVLAGKDKGKKGEVIAAMPSEQRVIVQGVNLVKRHTRPSATS-QGGIVEKEASIHVSNVAHEDPKDGKATRIGHKILEDGRKVRVARRSGEVIDR 106 The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 163
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Sequences
The
following sequences are available for this feature:
EST sequence >CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bpback to top |