CX303406

Overview
NameCX303406
Unique NameCX303406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_DEIGD (50S ribosomal protein L24 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplX PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 39/115 (33.91%), Postives = 67/115 (58.26%), Query Frame = 3
Query:    9 VPNSARGLDVSQRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +P  + G   + + ++ KGD V V +G  KGQ GKVL  + ++++ ++EGVN+  + V    +   G    R  ++H S + L+DP   KPT++ R+   DG KVRV+ ++G +I
Sbjct:    1 MPRPSAGSHHNDKLHVKKGDTVIVLRGKHKGQTGKVLLALPRDAKVVVEGVNLVTKHVKPSAANPQGGIEQREAALHASKVALVDPETGKPTRV-RKAIVDGKKVRVAVKSGKVI 114          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_THEEB (50S ribosomal protein L24 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   36 VSQRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            V  R ++ KGD V+V  G  K + G+VLA+  K S+ I++GVN++ + +  R  G  G+ I +   IH   +ML     +  ++I   +T DG KVR+ K+TG II
Sbjct:   11 VRYRMHVKKGDTVQVIAGSDKAKVGEVLAVFPKTSQVIVKGVNLKTKHLKPRQEGESGQIITKEAPIHSCKVMLYSTKQNVASRICYTYTEDGRKVRMLKKTGEII 116          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORJK (50S ribosomal protein L24 OS=Corynebacterium jeikeium (strain K411) GN=rplX PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I KGD V V  GP KG +GKV+    +  + ++EGVN   + V N         G  + +   IH SN+M++D SD  PT+I  R+  DG K+RVSKR G
Sbjct:    3 IRKGDTVLVISGPDKGAKGKVIEAYPQRDKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVVD-SDGNPTRIGYRFDEDGKKIRVSKRNG 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORGL (50S ribosomal protein L24 OS=Corynebacterium glutamicum GN=rplX PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   60 KGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            KGD V V  GP KG +G+V+A   K  + ++EGVN   + V N         G  + +   IH SN+M+ID SD  PT++  R+  +G KVRVS+R G
Sbjct:    5 KGDMVLVISGPDKGAKGQVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-SDGNPTRVGYRFDENGKKVRVSRRNG 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORGB (50S ribosomal protein L24 OS=Corynebacterium glutamicum (strain R) GN=rplX PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   60 KGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            KGD V V  GP KG +G+V+A   K  + ++EGVN   + V N         G  + +   IH SN+M+ID SD  PT++  R+  +G KVRVS+R G
Sbjct:    5 KGDMVLVISGPDKGAKGQVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-SDGNPTRVGYRFDENGKKVRVSRRNG 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_ANOFW (50S ribosomal protein L24 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplX PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            ++ KGD V+V  G  KG++G +LA   K +R ++EGVN+  + V    +   G  I +   IH SN+M +DP    PT++  +   DG KVR +KR+G I+ K
Sbjct:    2 HVKKGDKVQVISGKDKGKQGVILAAFPKKNRVLVEGVNIVKKHVKPSQANPQGGIINQEAPIHVSNVMPLDPKTGLPTRVGYK-VVDGKKVRYAKRSGEILDK 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RUBXD (50S ribosomal protein L24 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplX PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIR-PCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I +GD V V  G +KG+RG+V  ++ + +R +++GVN R R    R S      + R    IH SN+ML+DP+  +PT++  R+T  G KVRV+KR+G
Sbjct:    5 IKRGDTVVVISGREKGKRGEVERVLPRENRVVVKGVNTRTRHA--RPSQQNPDGLYRFDAPIHISNVMLVDPNTGEPTRVGYRFTESGQKVRVAKRSG 100          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_PORGI (50S ribosomal protein L24 OS=Porphyromonas gingivalis GN=rplX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V V  G  KG  G+VL ++ K  RAI+EG+NM  +          G  I +   IH SN+ ++DP   K T+I RR   +G  VR +K++G  I
Sbjct:    5 HIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEI 105          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_PORG3 (50S ribosomal protein L24 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rplX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V V  G  KG  G+VL ++ K  RAI+EG+NM  +          G  I +   IH SN+ ++DP   K T+I RR   +G  VR +K++G  I
Sbjct:    5 HIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEI 105          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_MAGSA (50S ribosomal protein L24 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            N+ KGD V V  G  KG++G+V+A +    R I++GVN+  R      +   G  + +  SIH SN+   DP D K T+I  +   DG KVRV++R+G +I +
Sbjct:    5 NVKKGDRVVVLAGKDKGKKGEVIAAMPSEQRVIVQGVNLVKRHTRPSATS-QGGIVEKEASIHVSNVAHEDPKDGKATRIGHKILEDGRKVRVARRSGEVIDR 106          
The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
RL24_DEIGD3.557e-1333.9150S ribosomal protein L24 OS=Deinococcus geotherma... [more]
RL24_THEEB4.645e-1336.7950S ribosomal protein L24 OS=Thermosynechococcus e... [more]
RL24_CORJK1.035e-1241.0050S ribosomal protein L24 OS=Corynebacterium jeike... [more]
RL24_CORGL1.035e-1240.8250S ribosomal protein L24 OS=Corynebacterium gluta... [more]
RL24_CORGB1.035e-1240.8250S ribosomal protein L24 OS=Corynebacterium gluta... [more]
RL24_ANOFW1.035e-1237.8650S ribosomal protein L24 OS=Anoxybacillus flavith... [more]
RL24_RUBXD1.351e-1240.8250S ribosomal protein L24 OS=Rubrobacter xylanophi... [more]
RL24_PORGI1.351e-1238.6150S ribosomal protein L24 OS=Porphyromonas gingiva... [more]
RL24_PORG31.351e-1238.6150S ribosomal protein L24 OS=Porphyromonas gingiva... [more]
RL24_MAGSA1.351e-1237.8650S ribosomal protein L24 OS=Magnetospirillum magn... [more]

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Properties
Property NameValue
Genbank descriptionC08030H06SK PhyRootSw1 Citrus sinensis cDNA clone C08030H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGCTTGATGTATCACAACGTTGG
AACATTGTGAAGGGTGATTTTGTTGAAGTCACCCAAGGTCCACAGAAAGG
GCAAAGGGGAAAAGTTCTTGCAATTATCCGTAAGAATAGTCGTGCAATCA
TAGAGGGAGTCAATATGCGTCCTCGTACTGTTATCAATCGGATCAGTGGT
GTTCCTGGCAAAACTATTATTCGACCTTGCTCTATTCATTACTCAAATAT
GATGTTGATCGATCCTTCAGACAGTAAACCTACAAAAATTGCCCGAAGAT
GGACTGCCGATGGTACCAAGGTCCGAGTATCAAAAAGAACTGGTCATATT
ATCCCGAAACCTGATTTTTCTGCCTTTCGAAGGCCACGCACTAAAGCACT
CGGTCAAAAGGATACTCCAGCAGATGAAGTTGTGAAAGTCACGTTTTCTG
AGTACGCAATGTATCTTCCTTATATCTACGCGAGAGCCAATATTGAAGGC
AAGAGCATTGAAGTGATCAATAATGACCAAAAATAAATCATAACTTTGTT
CGTCCTTGTAAATTCACCAAAACTTTT
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