CX303406

Overview
NameCX303406
Unique NameCX303406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_LISMF (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            ++ KGD V+V  G  KG+ GKVLA   K  R +IEG+NM  +          G  +     IH SN+MLIDP   +PT++      D  KVRV+K++G +I K
Sbjct:    2 HVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVIDK 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_LISMC (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            ++ KGD V+V  G  KG+ GKVLA   K  R +IEG+NM  +          G  +     IH SN+MLIDP   +PT++      D  KVRV+K++G +I K
Sbjct:    2 HVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVIDK 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_LISIN (50S ribosomal protein L24 OS=Listeria innocua GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            ++ KGD V+V  G  KG+ GKVLA   K  R +IEG+NM  +          G  +     IH SN+MLIDP   +PT++      D  KVRV+K++G +I K
Sbjct:    2 HVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVIDK 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_COREF (50S ribosomal protein L24 OS=Corynebacterium efficiens GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   60 KGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            KGD V V  GP KG +GKV+A   K  + ++EGVN   + V N         G  + +   IH SN+M+ID +D  PT++  R   +G KVRVS+R+G
Sbjct:    5 KGDMVLVISGPDKGAKGKVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-ADGNPTRVGFRVDENGKKVRVSRRSG 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORDI (50S ribosomal protein L24 OS=Corynebacterium diphtheriae GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344
            I KGD V V  GP KG +GKV+    K  + ++EGVN   + V N         G  + +   IH SN+M++D SD  PT++  R+  +G KVR+S+R G
Sbjct:    3 IHKGDMVLVISGPDKGAKGKVIQAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVLD-SDGNPTRVGYRFDENGKKVRISRRNG 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_AZOC5 (50S ribosomal protein L24 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG+ G+VL ++ K  RA++ GVN+  R    + +   G  I +   IH SN+ + DP D KPT++      DG KVRV+KR+G  I
Sbjct:    6 IKKGDKVVVLAGRDKGRTGEVLQVLPKEERALVRGVNVVKRHQ-RQTAQSEGGIISKEAPIHLSNIAVADPKDGKPTRVGFEVLDDGRKVRVAKRSGERI 104          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_ACICJ (50S ribosomal protein L24 OS=Acidiphilium cryptum (strain JF-5) GN=rplX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG+ G+VL ++   ++A++ GV +  R    R  G  G  I +   +H SN+ LIDP   KPT++  R   DG KVRV++++  +I
Sbjct:    5 IRKGDRVVVIAGASKGREGEVLRVLPAENKAVVSGVAVAKRHTKARGMGEQGGIIQKEMPVHLSNIALIDPETKKPTRVGFRVLEDGRKVRVARKSDSVI 104          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_XANP2 (50S ribosomal protein L24 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG+ G+V+ ++ K  RA++ GVN+  R    + +   G  I +   I  SN+ + DP D KPT++  +   DGTKVRV+KR+G  I
Sbjct:    5 IKKGDKVVVLTGRDKGRTGEVIQVMPKEERALVRGVNIVKRHQ-RQTANQEGGIISKEAPIQLSNVAVADPKDGKPTRVGFQVLEDGTKVRVAKRSGERI 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAAW (50S ribosomal protein L24 OS=Staphylococcus aureus (strain MW2) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V+V  G  KG+ GKV+A + K  R ++EGVN+  +          G  +    +IH SN+ L+DP  ++PT++  ++  DG KVR++K++G  I
Sbjct:    2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAAT (50S ribosomal protein L24 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V+V  G  KG+ GKV+A + K  R ++EGVN+  +          G  +    +IH SN+ L+DP  ++PT++  ++  DG KVR++K++G  I
Sbjct:    2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101          
The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
RL24_LISMF2.305e-1239.8150S ribosomal protein L24 OS=Listeria monocytogene... [more]
RL24_LISMC2.305e-1239.8150S ribosomal protein L24 OS=Listeria monocytogene... [more]
RL24_LISIN2.305e-1239.8150S ribosomal protein L24 OS=Listeria innocua GN=r... [more]
RL24_COREF2.305e-1240.8250S ribosomal protein L24 OS=Corynebacterium effic... [more]
RL24_CORDI2.305e-1239.0050S ribosomal protein L24 OS=Corynebacterium dipht... [more]
RL24_AZOC52.305e-1241.0050S ribosomal protein L24 OS=Azorhizobium caulinod... [more]
RL24_ACICJ2.305e-1238.0050S ribosomal protein L24 OS=Acidiphilium cryptum ... [more]
RL24_XANP23.011e-1240.0050S ribosomal protein L24 OS=Xanthobacter autotrop... [more]
RL24_STAAW3.011e-1236.6350S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAT3.011e-1236.6350S ribosomal protein L24 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionC08030H06SK PhyRootSw1 Citrus sinensis cDNA clone C08030H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGCTTGATGTATCACAACGTTGG
AACATTGTGAAGGGTGATTTTGTTGAAGTCACCCAAGGTCCACAGAAAGG
GCAAAGGGGAAAAGTTCTTGCAATTATCCGTAAGAATAGTCGTGCAATCA
TAGAGGGAGTCAATATGCGTCCTCGTACTGTTATCAATCGGATCAGTGGT
GTTCCTGGCAAAACTATTATTCGACCTTGCTCTATTCATTACTCAAATAT
GATGTTGATCGATCCTTCAGACAGTAAACCTACAAAAATTGCCCGAAGAT
GGACTGCCGATGGTACCAAGGTCCGAGTATCAAAAAGAACTGGTCATATT
ATCCCGAAACCTGATTTTTCTGCCTTTCGAAGGCCACGCACTAAAGCACT
CGGTCAAAAGGATACTCCAGCAGATGAAGTTGTGAAAGTCACGTTTTCTG
AGTACGCAATGTATCTTCCTTATATCTACGCGAGAGCCAATATTGAAGGC
AAGAGCATTGAAGTGATCAATAATGACCAAAAATAAATCATAACTTTGTT
CGTCCTTGTAAATTCACCAAAACTTTT
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