CX303406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_LISMF (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 ++ KGD V+V G KG+ GKVLA K R +IEG+NM + G + IH SN+MLIDP +PT++ D KVRV+K++G +I K Sbjct: 2 HVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVIDK 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_LISMC (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 ++ KGD V+V G KG+ GKVLA K R +IEG+NM + G + IH SN+MLIDP +PT++ D KVRV+K++G +I K Sbjct: 2 HVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVIDK 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_LISIN (50S ribosomal protein L24 OS=Listeria innocua GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 ++ KGD V+V G KG+ GKVLA K R +IEG+NM + G + IH SN+MLIDP +PT++ D KVRV+K++G +I K Sbjct: 2 HVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVIDK 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_COREF (50S ribosomal protein L24 OS=Corynebacterium efficiens GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3 Query: 60 KGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 KGD V V GP KG +GKV+A K + ++EGVN + V N G + + IH SN+M+ID +D PT++ R +G KVRVS+R+G Sbjct: 5 KGDMVLVISGPDKGAKGKVIAAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVID-ADGNPTRVGFRVDENGKKVRVSRRSG 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_CORDI (50S ribosomal protein L24 OS=Corynebacterium diphtheriae GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRI---SGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTG 344 I KGD V V GP KG +GKV+ K + ++EGVN + V N G + + IH SN+M++D SD PT++ R+ +G KVR+S+R G Sbjct: 3 IHKGDMVLVISGPDKGAKGKVIQAFPKTEKVLVEGVNRIKKHVANSAPERGAESGGIVTQEAPIHVSNVMVLD-SDGNPTRVGYRFDENGKKVRISRRNG 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_AZOC5 (50S ribosomal protein L24 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG+ G+VL ++ K RA++ GVN+ R + + G I + IH SN+ + DP D KPT++ DG KVRV+KR+G I Sbjct: 6 IKKGDKVVVLAGRDKGRTGEVLQVLPKEERALVRGVNVVKRHQ-RQTAQSEGGIISKEAPIHLSNIAVADPKDGKPTRVGFEVLDDGRKVRVAKRSGERI 104
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_ACICJ (50S ribosomal protein L24 OS=Acidiphilium cryptum (strain JF-5) GN=rplX PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG+ G+VL ++ ++A++ GV + R R G G I + +H SN+ LIDP KPT++ R DG KVRV++++ +I Sbjct: 5 IRKGDRVVVIAGASKGREGEVLRVLPAENKAVVSGVAVAKRHTKARGMGEQGGIIQKEMPVHLSNIALIDPETKKPTRVGFRVLEDGRKVRVARKSDSVI 104
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_XANP2 (50S ribosomal protein L24 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG+ G+V+ ++ K RA++ GVN+ R + + G I + I SN+ + DP D KPT++ + DGTKVRV+KR+G I Sbjct: 5 IKKGDKVVVLTGRDKGRTGEVIQVMPKEERALVRGVNIVKRHQ-RQTANQEGGIISKEAPIQLSNVAVADPKDGKPTRVGFQVLEDGTKVRVAKRSGERI 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAAW (50S ribosomal protein L24 OS=Staphylococcus aureus (strain MW2) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V+V G KG+ GKV+A + K R ++EGVN+ + G + +IH SN+ L+DP ++PT++ ++ DG KVR++K++G I Sbjct: 2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAAT (50S ribosomal protein L24 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V+V G KG+ GKV+A + K R ++EGVN+ + G + +IH SN+ L+DP ++PT++ ++ DG KVR++K++G I Sbjct: 2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101 The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 163
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Sequences
The
following sequences are available for this feature:
EST sequence >CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bpback to top |