CX303406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAA2 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain JH1) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V+V G KG+ GKV+A + K R ++EGVN+ + G + +IH SN+ L+DP ++PT++ ++ DG KVR++K++G I Sbjct: 2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAA1 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +I KGD V+V G KG+ GKV+A + K R ++EGVN+ + G + +IH SN+ L+DP ++PT++ ++ DG KVR++K++G I Sbjct: 2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RHILO (50S ribosomal protein L24 OS=Rhizobium loti GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG+ G+VL++ K+ A++ GVNM R + G I + I SN+ L DP D KPT++ + DG KVRV+KR+G +I Sbjct: 4 IRKGDKVVVLAGKDKGRSGEVLSVQPKDDTALVRGVNMIRRHQ-KQSQSQEGGIITKEAPIQLSNIALADPKDGKPTRVGFIFQKDGKKVRVAKRSGEVI 102
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_METNO (50S ribosomal protein L24 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 + KGD V V G KG+ G+V+ ++ K +RA++ GVN+ R + G I + +I SN+ + DP D KPT++ R DG KVR +KR+G +I Sbjct: 5 VKKGDTVVVLTGRDKGRSGEVIQVMPKENRALVRGVNLVKRHQ-RQTQAQEGGIISKEAAIDLSNLAVADPKDGKPTRVGFRILEDGRKVRFAKRSGDLI 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_KOCRD (50S ribosomal protein L24 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 45 RWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTA---DG----TKVRVSKRTG 344 ++ I GD V+V G KG++GKVL +I + SR ++EGVN+ + G G + IH SN+ML DP KPT++ R DG +VRVSK TG Sbjct: 3 KFKIKTGDLVQVITGKNKGEQGKVLRVITETSRVVVEGVNVVTKHKRANAQGEAGGLVKSEAPIHISNVMLGDPETGKPTRVGYRTETVERDGKQKTVRVRVSKSTG 109
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_EXIS2 (50S ribosomal protein L24 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 3 Query: 51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359 ++ KGD V+V G KG++G VL + K R I+EGVNM + G + + IH SN+MLIDP PT++ DG KVR++K++G + K Sbjct: 2 HVKKGDKVQVMTGKDKGKQGVVLTAMPKKDRVIVEGVNMIKKHSKPSQLNPQGGIVEKEAPIHVSNVMLIDPKTGNPTRVGFT-VVDGKKVRIAKKSGEALDK 103
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_DESVV (50S ribosomal protein L24 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 3 Query: 42 QRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVI-NRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +++ I K D V V G KG+ GKVL I+R R ++E VN+ R V N PG I + +H SN+M++ + +KPTK+ R+T DG KVR K+ II Sbjct: 2 KQFRIHKDDKVMVIAGKDKGKIGKVLKILRNKDRILVEKVNVAKRHVRPNPYRQQPGGIIEKEMPLHVSNVMVVCDACAKPTKVGYRYTEDGKKVRFCKKCNEII 106
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_DESVH (50S ribosomal protein L24 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 3 Query: 42 QRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVI-NRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 +++ I K D V V G KG+ GKVL I+R R ++E VN+ R V N PG I + +H SN+M++ + +KPTK+ R+T DG KVR K+ II Sbjct: 2 KQFRIHKDDKVMVIAGKDKGKIGKVLKILRNKDRILVEKVNVAKRHVRPNPYRQQPGGIIEKEMPLHVSNVMVVCDACAKPTKVGYRYTEDGKKVRFCKKCNEII 106
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUO2 (50S ribosomal protein L24 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplX PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V V G KG++G+VL ++ K+ +A++ G+N+ R + G I + IH SN+ + DP D KPT+I R DG KVRV+KR+G +I Sbjct: 4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRIGFR-VEDGKKVRVAKRSGALI 101
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BARBK (50S ribosomal protein L24 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplX1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3 Query: 54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353 I KGD V + G KG+ G+V+ + S+A++ G+NM R + +G+ I + IH SN+ + DP D KPT++ R ADG KVR +KR+G +I Sbjct: 4 IRKGDRVVILSGNDKGRSGEVIKVNPGESKALVRGINMVKRHQRQTQKQEAGI----ISKEAPIHLSNLAIADPKDGKPTRVGFRMNADGGKVRFAKRSGELI 102 The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 163
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Sequences
The
following sequences are available for this feature:
EST sequence >CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bpback to top |