CX303406

Overview
NameCX303406
Unique NameCX303406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAA2 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain JH1) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V+V  G  KG+ GKV+A + K  R ++EGVN+  +          G  +    +IH SN+ L+DP  ++PT++  ++  DG KVR++K++G  I
Sbjct:    2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_STAA1 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +I KGD V+V  G  KG+ GKV+A + K  R ++EGVN+  +          G  +    +IH SN+ L+DP  ++PT++  ++  DG KVR++K++G  I
Sbjct:    2 HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_RHILO (50S ribosomal protein L24 OS=Rhizobium loti GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG+ G+VL++  K+  A++ GVNM  R    +     G  I +   I  SN+ L DP D KPT++   +  DG KVRV+KR+G +I
Sbjct:    4 IRKGDKVVVLAGKDKGRSGEVLSVQPKDDTALVRGVNMIRRHQ-KQSQSQEGGIITKEAPIQLSNIALADPKDGKPTRVGFIFQKDGKKVRVAKRSGEVI 102          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_METNO (50S ribosomal protein L24 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            + KGD V V  G  KG+ G+V+ ++ K +RA++ GVN+  R    +     G  I +  +I  SN+ + DP D KPT++  R   DG KVR +KR+G +I
Sbjct:    5 VKKGDTVVVLTGRDKGRSGEVIQVMPKENRALVRGVNLVKRHQ-RQTQAQEGGIISKEAAIDLSNLAVADPKDGKPTRVGFRILEDGRKVRFAKRSGDLI 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_KOCRD (50S ribosomal protein L24 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 3
Query:   45 RWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTA---DG----TKVRVSKRTG 344
            ++ I  GD V+V  G  KG++GKVL +I + SR ++EGVN+  +       G  G  +     IH SN+ML DP   KPT++  R      DG     +VRVSK TG
Sbjct:    3 KFKIKTGDLVQVITGKNKGEQGKVLRVITETSRVVVEGVNVVTKHKRANAQGEAGGLVKSEAPIHISNVMLGDPETGKPTRVGYRTETVERDGKQKTVRVRVSKSTG 109          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_EXIS2 (50S ribosomal protein L24 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 3
Query:   51 NIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHIIPK 359
            ++ KGD V+V  G  KG++G VL  + K  R I+EGVNM  +          G  + +   IH SN+MLIDP    PT++      DG KVR++K++G  + K
Sbjct:    2 HVKKGDKVQVMTGKDKGKQGVVLTAMPKKDRVIVEGVNMIKKHSKPSQLNPQGGIVEKEAPIHVSNVMLIDPKTGNPTRVGFT-VVDGKKVRIAKKSGEALDK 103          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_DESVV (50S ribosomal protein L24 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   42 QRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVI-NRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +++ I K D V V  G  KG+ GKVL I+R   R ++E VN+  R V  N     PG  I +   +H SN+M++  + +KPTK+  R+T DG KVR  K+   II
Sbjct:    2 KQFRIHKDDKVMVIAGKDKGKIGKVLKILRNKDRILVEKVNVAKRHVRPNPYRQQPGGIIEKEMPLHVSNVMVVCDACAKPTKVGYRYTEDGKKVRFCKKCNEII 106          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_DESVH (50S ribosomal protein L24 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   42 QRWNIVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVI-NRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            +++ I K D V V  G  KG+ GKVL I+R   R ++E VN+  R V  N     PG  I +   +H SN+M++  + +KPTK+  R+T DG KVR  K+   II
Sbjct:    2 KQFRIHKDDKVMVIAGKDKGKIGKVLKILRNKDRILVEKVNVAKRHVRPNPYRQQPGGIIEKEMPLHVSNVMVVCDACAKPTKVGYRYTEDGKKVRFCKKCNEII 106          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BRUO2 (50S ribosomal protein L24 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNMRPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V V  G  KG++G+VL ++ K+ +A++ G+N+  R      +   G  I +   IH SN+ + DP D KPT+I  R   DG KVRV+KR+G +I
Sbjct:    4 IRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAG-IISKEAPIHLSNLAIADPKDGKPTRIGFR-VEDGKKVRVAKRSGALI 101          
BLAST of CX303406 vs. ExPASy Swiss-Prot
Match: RL24_BARBK (50S ribosomal protein L24 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplX1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   54 IVKGDFVEVTQGPQKGQRGKVLAIIRKNSRAIIEGVNM---RPRTVINRISGVPGKTIIRPCSIHYSNMMLIDPSDSKPTKIARRWTADGTKVRVSKRTGHII 353
            I KGD V +  G  KG+ G+V+ +    S+A++ G+NM     R    + +G+    I +   IH SN+ + DP D KPT++  R  ADG KVR +KR+G +I
Sbjct:    4 IRKGDRVVILSGNDKGRSGEVIKVNPGESKALVRGINMVKRHQRQTQKQEAGI----ISKEAPIHLSNLAIADPKDGKPTRVGFRMNADGGKVRFAKRSGELI 102          
The following BLAST results are available for this feature:
BLAST of CX303406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
RL24_STAA23.011e-1236.6350S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAA13.011e-1236.6350S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_RHILO3.011e-1241.0050S ribosomal protein L24 OS=Rhizobium loti GN=rpl... [more]
RL24_METNO3.011e-1238.0050S ribosomal protein L24 OS=Methylobacterium nodu... [more]
RL24_KOCRD3.011e-1239.2550S ribosomal protein L24 OS=Kocuria rhizophila (s... [more]
RL24_EXIS23.011e-1237.8650S ribosomal protein L24 OS=Exiguobacterium sibir... [more]
RL24_DESVV3.011e-1240.0050S ribosomal protein L24 OS=Desulfovibrio vulgari... [more]
RL24_DESVH3.011e-1240.0050S ribosomal protein L24 OS=Desulfovibrio vulgari... [more]
RL24_BRUO23.011e-1241.0050S ribosomal protein L24 OS=Brucella ovis (strain... [more]
RL24_BARBK3.011e-1237.8650S ribosomal protein L24 OS=Bartonella bacillifor... [more]

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Properties
Property NameValue
Genbank descriptionC08030H06SK PhyRootSw1 Citrus sinensis cDNA clone C08030H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303406 ID=CX303406; Name=CX303406; organism=Citrus sinensis; type=EST; length=577bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGCTTGATGTATCACAACGTTGG
AACATTGTGAAGGGTGATTTTGTTGAAGTCACCCAAGGTCCACAGAAAGG
GCAAAGGGGAAAAGTTCTTGCAATTATCCGTAAGAATAGTCGTGCAATCA
TAGAGGGAGTCAATATGCGTCCTCGTACTGTTATCAATCGGATCAGTGGT
GTTCCTGGCAAAACTATTATTCGACCTTGCTCTATTCATTACTCAAATAT
GATGTTGATCGATCCTTCAGACAGTAAACCTACAAAAATTGCCCGAAGAT
GGACTGCCGATGGTACCAAGGTCCGAGTATCAAAAAGAACTGGTCATATT
ATCCCGAAACCTGATTTTTCTGCCTTTCGAAGGCCACGCACTAAAGCACT
CGGTCAAAAGGATACTCCAGCAGATGAAGTTGTGAAAGTCACGTTTTCTG
AGTACGCAATGTATCTTCCTTATATCTACGCGAGAGCCAATATTGAAGGC
AAGAGCATTGAAGTGATCAATAATGACCAAAAATAAATCATAACTTTGTT
CGTCCTTGTAAATTCACCAAAACTTTT
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