CX303400

Overview
NameCX303400
Unique NameCX303400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.369e-52
Identity = 95/184 (51.63%), Postives = 132/184 (71.74%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGG---QLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSS-QGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            FY+ FD+       ++ +     Q ++L+LDR SGSGF SK  YLFG   +Q+KLV G+SAGTVT++YLSS +G  HDEID EF+GN+SG PY+++TN++A G G +E QFYLWFDPT +FHTY +IW PQ++IF VD++P+R FK  + L   +P+++PM+   +LW+   WATR G VK DW
Sbjct:   28 FYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWATRHGDVKIDW 209          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.753e-51
Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 2
Query:  134 DFDL----TWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            DFD+    TWG       N G+ + LS+D  SGSGF+SK  Y  G   M++KL   DSAG VTA+YL+S+G THDE+DFEFLGN  G+P  + TN+F+ G+G REQ+F  WFDPT +FHTY ++W P  ++F VD +PIRVFKN +  GV +P ++PM+ + SLWN ++WAT GG  K +W
Sbjct:   31 DFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINW 210          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.855e-50
Identity = 89/180 (49.44%), Postives = 128/180 (71.11%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            F Q++ +TWG       + G+ + L +D+ SG GF+SK  Y  G  +M++K+ +G++ G VTA+YL+S+G  HDEIDFEFLGN +G+P  L TN+F  G+GNRE++F LWF+PT+++HTY ++W P  ++F VDNIPIRV+KN    GV +P ++PM+   SLWN DDWAT GG  K +W
Sbjct:   35 FGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKNEN--GVSYP-SKPMQVEASLWNGDDWATDGGRTKVNW 211          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.417e-49
Identity = 88/180 (48.89%), Postives = 127/180 (70.56%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            F  ++ +TWG       N G+ + LSLD  SGSGF+SK  Y  G   +++K+   D++G VTA+YL+S+G THDE+DFEFLGN  G+   + TN+F  GKGNREQ+  LWFDP+++FHTY+++W P  ++  VDNIP+RVFKN  S G+ +P ++PM+ ++SLWN ++WAT GG  K +W
Sbjct:   39 FDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINW 216          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.003e-36
Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGN--REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGG 646
            F + +   +GD+   +   G+ + L+LD  +GSGF S   YL G     +KL A  SAG V A+YLS+       HDEIDFEFLGN+ G+ + + TNI+  G  +  RE+++ LWFDPT +FH YS++W   H+IF VDN+PIR  K   S+G  FP  +PM    ++W+   WAT GG
Sbjct:   31 FDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGG 208          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.987e-35
Identity = 73/179 (40.78%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGK--GNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGG 646
            F + +   +GDK   +   G+ + L+LD  +GSGF S   YL G     +KL +  +AG V A+Y+S+       HDEIDFEFLGN+  + + + TNI+  G     RE+++ LWFDPT +FH YS++W   H+IF VDN+PIR  K    +G  FP ++PM    ++W+   WAT GG
Sbjct:   31 FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGG 208          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.389e-35
Identity = 76/188 (40.43%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPT---HDEIDFEFLGNVSGQPYILHTNIFAQGKGN-----REQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            FY+ F   WG +  ++      L++ LDR SGSGF+S + +  G     +KL  G +AG +T+ YLS+       HDE+D EFLG   G+PY L TN++ +G G+     RE +F LWFDPT++FH Y+++W P+ +IFLVD+IPIR +    +   P    +PM    S+W+A  WAT  G  K D+
Sbjct:   43 FYKGFRNLWGPQHQRMDQNA--LTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADY 225          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 74/188 (39.36%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  125 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGP---THDEIDFEFLGNVSGQPYILHTNIFAQGKGNR-----EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            F ++F   WG +  +      +++L LD+ +GSGF+S R Y  G     +KL  G +AG  T+ YLS+       HDE+D EFLG   G+PY L TN+F +G G+R     E +F LWFDPT++FH Y+++W P  ++F VD++PIR +        P    +PM    S+W+A DWAT  G +K D+
Sbjct:   39 FDREFRTLWGSQHQR--REQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFP---TRPMWVYGSIWDASDWATENGRIKADY 221          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.346e-34
Identity = 69/160 (43.12%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  182 GQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGP---THDEIDFEFLGNVSGQPYILHTNIFAQG--KGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGG 646
            G L  L+LD+ SG+G  SK  Y +G    +LKL AG ++G V A+YLS+      +HDEID E LG      + + TN++A G  +  RE++FY WFDPT+ FH Y++IW   H +FLVDNIP+R F N  +    +P ++PM   +++W+  +WAT+GG
Sbjct:   60 GSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGG 218          
BLAST of CX303400 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.066e-33
Identity = 68/161 (42.24%), Postives = 100/161 (62.11%), Query Frame = 2
Query:  197 LSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR--EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKNLLSLWNADDWATRGGLVKTDW 664
            L LDR +GSGF S   Y  G     +KL A  +AG V A+Y S+      THDE+D EFLGN+ G+P+   TN++  G  +R  E+++ LWFDP++ FH YS++W P  +IF VD++PIR     +++G  +P  +PM    ++W+A DWAT GG  K ++
Sbjct:   56 LLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANY 215          
The following BLAST results are available for this feature:
BLAST of CX303400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
XTH8_ORYSJ1.369e-5251.63Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH2_ARATH5.753e-5151.38Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH3_ARATH2.855e-5049.44Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH2.417e-4948.89Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH4.003e-3643.02Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.987e-3540.78Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH3.389e-3540.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH7.549e-3539.36Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH8.346e-3443.13Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH7.066e-3342.24Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC08030G12SK PhyRootSw1 Citrus sinensis cDNA clone C08030G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303400 ID=CX303400; Name=CX303400; organism=Citrus sinensis; type=EST; length=665bp
CTCTCTCTTGTTGTGTTATAACTCATACAGCAAATTAAGAACTATGGGTT
ATCATTATTCTTGTAATGGGTTGTTGTTATTGGTGAGTGTTTTGATGGTT
GTTGCCTCATCAGCTGTGGGTAGCTTCTATCAAGACTTTGATTTAACATG
GGGTGATAAGAGAGCTAAGATTTTCAATGGCGGCCAACTTCTTTCTCTGT
CTCTAGACAGAGTTTCTGGCTCTGGTTTTCAGTCCAAGAGAGACTACTTA
TTTGGCAGAATTGATATGCAGCTCAAGCTTGTTGCTGGTGACTCTGCTGG
CACTGTCACTGCCTACTATCTGTCTTCGCAAGGGCCGACTCATGATGAGA
TTGATTTTGAGTTCTTGGGAAATGTGAGCGGTCAGCCTTACATTCTTCAC
ACAAATATATTCGCTCAGGGTAAAGGCAACCGGGAGCAACAATTCTATCT
CTGGTTTGATCCCACAAGAAACTTCCACACTTACTCCGTCATCTGGAAGC
CCCAACACGTCATCTTCTTGGTAGATAACATTCCCATTAGAGTGTTCAAA
AATGCTGAATCTCTTGGAGTTCCCTTCCCTAAAAACCAACCAATGAAGAA
TTTACTCAGTCTTTGGAATGCTGATGACTGGGCTACAAGAGGAGGGTTGG
TGAAAACTGACTGGA
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