CX303396

Overview
NameCX303396
Unique NameCX303396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX303396 vs. ExPASy Swiss-Prot
Match: URIC_DROVI (Uricase OS=Drosophila virilis GN=Uro PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 3 
Query:    6 DRYTSLPESTDRLLGTSADAEWVYNSDLVNRGKIDYNASFEKAVNALLETFSGPADKGIYSKSVQETLYLMACDAIKEVNSIDEVTLMMPNIHNLPFNLETYGFRNKDHTGNPFIFYPIDEPHGMIKATVTR-TIRSRL 419
            D + +L +  DR+  T  +  W Y+    +   +++  ++E   + ++  F+G    GI S SVQ TLYL     +  +  +  V++ MPN H   FN +T  F+      N  +F P D+PHG I A ++R +++S L
Sbjct:  210 DEFRTLADQYDRIFSTVVECSWEYS----DTESVNFLHAWETVKDIVVRNFAGDPSVGIPSPSVQHTLYLSEKQVLDVLPQVSVVSMTMPNKHY--FNFDTKPFQQLVPGENNEVFIPTDKPHGTIYAQLSRKSLKSHL 342
The following BLAST results are available for this feature:
BLAST of CX303396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
URIC_DROVI5.087e-1129.50Uricase OS=Drosophila virilis GN=Uro PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08030G08SK PhyRootSw1 Citrus sinensis cDNA clone C08030G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303396 ID=CX303396; Name=CX303396; organism=Citrus sinensis; type=EST; length=622bp
CAAAAGATCGCTACACCTCTTTACCGGAGTCTACTGACCGTCTCTTGGGC
ACGTCAGCCGATGCTGAGTGGGTCTATAACTCTGACTTAGTCAACAGAGG
TAAAATCGACTACAATGCGAGCTTTGAGAAGGCTGTAAATGCATTATTAG
AGACCTTTAGTGGTCCTGCTGATAAAGGTATTTACAGTAAATCAGTGCAA
GAGACTCTCTATTTAATGGCATGTGATGCGATTAAGGAAGTTAACAGTAT
TGATGAAGTCACTTTAATGATGCCTAACATTCATAACCTTCCTTTTAACC
TTGAAACTTATGGTTTCCGTAATAAAGATCATACTGGAAATCCTTTTATC
TTTTATCCAATTGATGAACCACATGGAATGATCAAGGCAACTGTGACAAG
AACTATTAGATCAAGATTGTAAACACCTTTATTTCTGTCTTTCGATCTTT
GGAAAGTGACGAATACTATCACTCACTAGAATCACATTACAAAACTGCGT
CATATCGTAAAAATAAACAGAAACATTGTTAGATTATATGTGTAGAATAG
GATGGGGGAGATACTCTCTTCATTTGAACGATTTAAAATAAAGCAATCAA
AGTCAAAAAAAAAAAAAAAAAA
back to top