CX303388

Overview
NameCX303388
Unique NameCX303388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.305e-36
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   72 DYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            ++ F   DAG+S  Y  +   +R  G++VIK  PCK+  +STSKTGKHGHAK +  AIDIFTGKK ED+ PSTHN  VP V R E  L+DI  D F SLM+ DG+ ++DVK PE     G  ++TAF+ GK   VT++SAMG +  ++ KE
Sbjct:    5 EHTFETADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDID-DGFLSLMNMDGDTKDDVKAPE--GELGDSLQTAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 76/153 (49.67%), Postives = 107/153 (69.93%), Query Frame = 3
Query:   63 DINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            D+ DY  +G+  GAS  +  +   +R  G++VIK  PCK+  +STSKTGKHGHAK N TAIDIFTGKKYE+I PSTHN  VP V+RKE +++D+  D + SL+D  G V+ED+ LPE  D+ G+EI    + GK   V+++SA+G + +V++K
Sbjct:    8 DVEDYAQAGS--GASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQ-DGYLSLLDAGGEVKEDLALPE--DDIGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 75/155 (48.39%), Postives = 98/155 (63.23%), Query Frame = 3
Query:   72 DYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKEEQES 536
            ++ F   DAGAS  Y  +   +R  G++VIK  PCK+  +STSKTGKHGHAK +   +DIFTGKK ED+ PSTHN  VPFV R E  L+DI  D + SLM  DG  ++DVK PE     G  ++ AF+ GK   VT++SAMG +  ++ KE   S
Sbjct:    5 EHTFENADAGASATYPMQCSALRKNGFVVIKGRPCKIVDMSTSKTGKHGHAKVHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDID-DGYLSLMTMDGETKDDVKAPE--GELGDSMQAAFDEGKDLMVTIISAMGEEAAISFKEAPRS 156          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.475e-36
Identity = 73/155 (47.10%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            M +++D  F  TD+GAS  Y  +   +R  G++++K  PCK+  +STSKTGKHGHAK +   IDIF+ KKYEDI PSTHN  VP V R++L L+ IS D F +LM E G++RED+K+PE     G ++R  F++GK    T++ A G + ++AIK
Sbjct:    1 MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPE--GELGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.105e-35
Identity = 69/155 (44.52%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            M DI D  F   D+GAS  +  +   +R  G++++K  PCK+  +STSKTGKHGHAK +   IDIF GKKYEDI PSTHN  VP V R++  L DIS D + +LM ++G++RED+K+P+   + G ++R+ F++GK    T++ + G + ++A+K
Sbjct:    1 MADIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPD--GDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.105e-35
Identity = 69/155 (44.52%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   57 MGDINDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            M DI D  F   D+GAS  +  +   +R  G++++K  PCK+  +STSKTGKHGHAK +   IDIF GKKYEDI PSTHN  VP V R++  L DIS D + +LM ++G++RED+K+P+   + G ++R+ F++GK    T++ + G + ++A+K
Sbjct:    1 MADIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPD--GDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.351e-35
Identity = 72/151 (47.68%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   69 NDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            +D DF   DAGAS  +  +   +R  G++V+K  PCK+  +STSKTGKHGHAK +   IDIFTGKKYEDI PSTHN  VP + R +  L+ I  D + SL+ + G VRED++LPE   + G+EI   +++G+   +T++SAM  +  VAIK
Sbjct:    3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPE--GDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.595e-34
Identity = 72/148 (48.65%), Postives = 101/148 (68.24%), Query Frame = 3
Query:   81 FSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIKE 524
            F   DAGA+  +  +   +R  G++VIK+ PCK+  +STSKTGKHGHAK +  AIDIFTGKK ED+ PSTHN  VP V+R+E  L+DI  D + SLM  DG+ ++DVK+PE     G ++++ F+ GK   VT++SAMG +  ++ KE
Sbjct:    7 FETADAGAALTFPMQCSALRKNGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDID-DGYLSLMTADGDTKDDVKVPE--GELGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.595e-34
Identity = 72/151 (47.68%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   69 NDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            +D DF   DAGAS  +  +   +R  G++V+K  PCK+  +STSKTGKHGHAK +   IDIFTGKKYEDI PSTHN  VP + R +  L+ I  D + SL+ + G VRED++LPE   + G+EI   ++ G+   +T++SAM  +  VAIK
Sbjct:    3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPE--GDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CX303388 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.595e-34
Identity = 72/151 (47.68%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   69 NDYDFSGTDAGASHVYNEEAGQIRVGGYIVIKDHPCKVTAVSTSKTGKHGHAKCNFTAIDIFTGKKYEDIIPSTHNTHVPFVTRKELSLVDISGDDFCSLMDEDGNVREDVKLPEYPDNFGREIRTAFETGKSHSVTLVSAMGHDQIVAIK 521
            +D DF   DAGAS  +  +   +R  G++V+K  PCK+  +STSKTGKHGHAK +   IDIFTGKKYEDI PSTHN  VP + R +  L+ I  D + SL+ + G VRED++LPE   + G+EI   ++ G+   +T++SAM  +  VAIK
Sbjct:    3 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQ-DGYLSLLQDSGEVREDLRLPE--GDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
The following BLAST results are available for this feature:
BLAST of CX303388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF5A2_YEAST1.305e-3650.33Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A_DICDI4.958e-3649.67Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A1_YEAST4.958e-3648.39Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_DROME6.475e-3647.10Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A_SPOFR1.105e-3544.52Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX1.105e-3544.52Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A1_RABIT9.351e-3547.68Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A_CANAL1.595e-3448.65Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A1_RAT1.595e-3447.68Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE1.595e-3447.68Eukaryotic translation initiation factor 5A-1 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC08030F12SK PhyRootSw1 Citrus sinensis cDNA clone C08030F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303388 ID=CX303388; Name=CX303388; organism=Citrus sinensis; type=EST; length=646bp
GAGGCCTTATCCACGCAGTAGATCTTTGTTTTTCTTTGTATTTTTGATAA
TCAAGAATGGGAGATATTAATGATTATGATTTCTCTGGAACTGACGCTGG
TGCCTCCCACGTCTATAACGAAGAAGCTGGTCAAATCCGTGTCGGAGGAT
ACATTGTTATCAAGGATCATCCTTGCAAGGTTACCGCTGTCTCCACCTCC
AAGACTGGAAAGCACGGTCACGCCAAGTGCAACTTCACTGCTATTGATAT
CTTCACCGGAAAGAAGTACGAAGATATCATCCCTTCCACCCACAACACCC
ACGTTCCTTTCGTTACCCGCAAAGAATTATCCTTGGTTGATATTTCTGGT
GATGATTTTTGCTCATTAATGGACGAAGATGGAAATGTCCGTGAAGATGT
CAAGCTCCCTGAGTACCCAGATAACTTTGGTCGTGAAATCCGCACTGCCT
TCGAAACTGGAAAGTCTCACTCTGTCACTCTTGTCTCTGCTATGGGTCAT
GATCAAATCGTCGCCATCAAGGAAGAGCAAGAGTCCAAGAATTAAATTAA
CTTACATAAATTTCCTGGTTTCGTCATTGTTCTAAAATACTTGGTGAAAT
CAGCGTGGATAATATATATATACAATAATAATAATTAATAAATATA
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