CX303385

Overview
NameCX303385
Unique NameCX303385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK2A_SPOFR (Casein kinase II subunit alpha OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.538e-48
Identity = 85/115 (73.91%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT+EL  YL+KYH+ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLD+LLRYDH +R TAREAM HPYFY +
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEELFEYLDKYHIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDRLLRYDHYERYTAREAMDHPYFYPI 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.008e-48
Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY +
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQTRLTAREAMDHPYFYPI 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_MOUSE (Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.632e-48
Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLT REAM HP+FY V
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTVREAMEHPFFYTV 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK22_MOUSE (Casein kinase II subunit alpha' OS=Mus musculus GN=Csnk2a2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+G DN DQLV+IAKVLGTDEL  YL+KYH++LDP    ++G+HSRK W  FI+S+N+HLVSPEA+D LDKLLRYDHQ RLTA+EAM HPYFY V
Sbjct:  214 LDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKVLGTDELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK22_BOVIN (Casein kinase II subunit alpha' OS=Bos taurus GN=CSNK2A2 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+G DN DQLV+IAKVLGTDEL  YL+KYH++LDP    ++G+HSRK W  FI+S+N+HLVSPEA+D LDKLLRYDHQ RLTA+EAM HPYFY V
Sbjct:  214 LDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKVLGTDELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK22_CHICK (Casein kinase II subunit alpha' OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.438e-47
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+G DN DQLV+IAKVLGTDEL  YL+KYH+ELDP    ++G+HSRK W  FI+S+N+HLVSPE +D LDKLLRYDHQ RLTA+EAM HPYFY V
Sbjct:  214 LDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKVLGTDELYGYLKKYHIELDPHFNDILGQHSRKRWENFIHSENRHLVSPEVLDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK2A_CAEEL (Casein kinase II subunit alpha OS=Caenorhabditis elegans GN=kin-3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 82/115 (71.30%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGTDEL  Y+ +YH++LDP+   ++GRHSRK W RFI+++NQHLV+PEA+DFLDKLLRYDH +RLTA+EAM H YF  V
Sbjct:  212 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTDELYEYIARYHIDLDPRFNDILGRHSRKRWERFIHAENQHLVTPEALDFLDKLLRYDHAERLTAQEAMGHEYFRPV 326          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK22_HUMAN (Casein kinase II subunit alpha' OS=Homo sapiens GN=CSNK2A2 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFR+EPFF+G DN DQLV+IAKVLGT+EL  YL+KYH++LDP    ++G+HSRK W  FI+S+N+HLVSPEA+D LDKLLRYDHQ RLTA+EAM HPYFY V
Sbjct:  214 LDMWSLGCMLASMIFRREPFFHGQDNYDQLVRIAKVLGTEELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK2A_NEUCR (Casein kinase II subunit alpha OS=Neurospora crassa GN=cka PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.119e-44
Identity = 84/116 (72.41%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVR 351
            +DMWSLG MFA MIFRKEPFF+G  N DQLVKIAKVLGTDEL  YL+KY +ELD Q + ++GR  RKPW  FIN++NQ  VS EAIDFLDKLLRYDH +RLTA+EAMAHPYF  VR
Sbjct:  206 LDMWSLGAMFASMIFRKEPFFHGQSNSDQLVKIAKVLGTDELFDYLDKYEIELDAQYDDILGRFQRKPWHSFINAENQRFVSNEAIDFLDKLLRYDHNERLTAKEAMAHPYFAPVR 321          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK2A_DICDI (Casein kinase II subunit alpha OS=Dictyostelium discoideum GN=casK PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.809e-42
Identity = 75/112 (66.96%), Postives = 94/112 (83.93%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYF 339
            +DMWSLGCMFAGM+F+K+PFF+GHDN DQLVKI K+LGT+E  AYL+KY + +D  + +++G+H +KPWSRFI  +NQHL  PEAIDFL+KLLRYD  +RLT REAM HPYF
Sbjct:  221 LDMWSLGCMFAGMLFQKDPFFHGHDNIDQLVKIVKILGTEEFYAYLDKYGIVVDHTILSIIGKHPKKPWSRFITKENQHLAVPEAIDFLEKLLRYDPAERLTTREAMEHPYF 332          
The following BLAST results are available for this feature:
BLAST of CX303385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CSK2A_SPOFR1.538e-4873.91Casein kinase II subunit alpha OS=Spodoptera frugi... [more]
CSK21_XENLA2.008e-4873.91Casein kinase II subunit alpha OS=Xenopus laevis G... [more]
CSK21_MOUSE7.632e-4873.04Casein kinase II subunit alpha OS=Mus musculus GN=... [more]
CSK22_MOUSE6.461e-4773.04Casein kinase II subunit alpha' OS=Mus musculus GN... [more]
CSK22_BOVIN6.461e-4773.04Casein kinase II subunit alpha' OS=Bos taurus GN=C... [more]
CSK22_CHICK8.438e-4773.04Casein kinase II subunit alpha' OS=Gallus gallus P... [more]
CSK2A_CAEEL4.188e-4671.30Casein kinase II subunit alpha OS=Caenorhabditis e... [more]
CSK22_HUMAN4.188e-4671.30Casein kinase II subunit alpha' OS=Homo sapiens GN... [more]
CSK2A_NEUCR5.119e-4472.41Casein kinase II subunit alpha OS=Neurospora crass... [more]
CSK2A_DICDI2.809e-4266.96Casein kinase II subunit alpha OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC08030F09SK PhyRootSw1 Citrus sinensis cDNA clone C08030F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303385 ID=CX303385; Name=CX303385; organism=Citrus sinensis; type=EST; length=659bp
GAGGTGGACATGTGGAGCCTCGGCTGTATGTTTGCAGGAATGATTTTTCG
CAAGGAACCATTCTTTTATGGTCATGACAATCAAGACCAGCTTGTCAAAA
TTGCAAAGGTTCTGGGAACCGATGAGTTAAATGCATACTTGGAAAAATAT
CATTTAGAGCTTGATCCGCAGCTTGAAGCTCTAGTTGGAAGGCATAGCAG
GAAGCCATGGTCCAGATTCATTAATTCAGATAATCAGCATCTAGTTTCCC
CAGAGGCCATTGATTTTCTTGATAAGCTTCTTCGCTATGATCACCAGGAC
AGGCTTACAGCCAGAGAGGCAATGGCTCATCCTTATTTCTATCAAGTGAG
GGCTGCAGAAAATAGCAGAGTCCGCGCGCATTAGCTCCATGCTTAGTCCC
TTCCTGAGTATACTTGTATTTCATTTGGGCCCATTCTTATGGATGGAGTA
TATTTCTGGTCTATTGATAAGTCGTTGTACCAGTAGTCTATAGGTCGCAT
CCATATTTTCAGATGGTCTATCGACAAGTCGTTGGTAGTATACTTGTATT
TCATTTGAGCTTTAATGTTGCTCGTGTGGACTGTACAGCTTGTTCCGTTG
TGTTTGCCTTATACATGTCAATTATTTGTACAAAATTACAGATAATAACT
CTTCTTTTG
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