CX303385

Overview
NameCX303385
Unique NameCX303385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYF 339
            VD+WS+GC+FA M+ RK   F G    DQL +I ++LGT   + +     L   P  +    + +RK     + +     + PE  D L +LL+YD   R+TA+ A+AHPYF
Sbjct:  184 VDIWSIGCIFAEMVTRKA-LFPGDSEIDQLFRIFRMLGTPSEDTWPGVTQL---PDYKGSFPKWTRKGLEEIVPN-----LEPEGRDLLMQLLQYDPSQRITAKTALAHPYF 286          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CDC2H_THEPA (Cell division control protein 2 homolog OS=Theileria parva GN=CRK2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYF 339
            VD+WS+GC+FA MI    P F G   QDQL +I K+LGT  ++++ +  +L   P        + ++ WS  +   N+       ID + ++L+ D   R++A+EA+ H YF
Sbjct:  182 VDIWSVGCIFAEMI-NGVPLFPGISEQDQLKRIFKILGTPSVDSWPQVVNL---PAYNPDFSYYEKQSWSSIVPKLNE-----SGIDLISRMLQLDPVQRISAKEALKHDYF 284          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CDC2B_XENLA (Cell division control protein 2-B OS=Xenopus laevis GN=cdc2-B PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKP-WSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYF 339
            VD+WS+G +FA  I  K+P F+G    DQL +I + LGT          + E+ P++E+L    +  P W     S N   +  + +D L K+L YD   R++AR+AM HPYF
Sbjct:  185 VDVWSVGTIFAE-IATKKPLFHGDSEIDQLFRIFRSLGTP---------NNEVWPEVESLQDYKNTFPKWKGGSLSSNVKNIDEDGLDLLSKMLVYDPAKRISARKAMLHPYF 287          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: PPK23_SCHPO (Serine/threonine-protein kinase ppk23 OS=Schizosaccharomyces pombe GN=ppk23 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 EVDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQ 345
            E+DMWS+GC+FA MI R  P F G    DQL KI  +LG      + + + L    ++     +H   P    I +   +L    A D L++LL  +   R++A+EA+ HPYFY+
Sbjct:  254 EIDMWSIGCIFAEMITRT-PLFSGKSELDQLYKIFNLLGYPTREEWPQYFLLPYANKI-----KHPTVPTHSKIRTSIPNLTG-NAYDLLNRLLSLNPAKRISAKEALEHPYFYE 361          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAVI (Cell division control protein 2 homolog OS=Plasmodium vivax GN=CRK2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHL-ELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYF 339
            +DMWS+GC+FA M+    P F G    DQL++I ++LGT     +     L + DP        +   PW  F+       +    ID L K+LR D   R+TA++A+ H YF
Sbjct:  182 IDMWSVGCIFAEMV-NGRPLFPGVSETDQLMRIFRILGTPNSENWPNVTELPKYDPDFMV----YEPLPWETFLKG-----LDDTGIDLLSKMLRLDPNQRITAKQALEHAYF 284          
The following BLAST results are available for this feature:
BLAST of CX303385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CDK3_HUMAN5.713e-1136.61Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDC2H_THEPA7.461e-1133.93Cell division control protein 2 homolog OS=Theiler... [more]
CDC2B_XENLA7.461e-1137.17Cell division control protein 2-B OS=Xenopus laevi... [more]
PPK23_SCHPO9.744e-1135.65Serine/threonine-protein kinase ppk23 OS=Schizosac... [more]
CDC2H_PLAVI9.744e-1134.51Cell division control protein 2 homolog OS=Plasmod... [more]

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Properties
Property NameValue
Genbank descriptionC08030F09SK PhyRootSw1 Citrus sinensis cDNA clone C08030F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303385 ID=CX303385; Name=CX303385; organism=Citrus sinensis; type=EST; length=659bp
GAGGTGGACATGTGGAGCCTCGGCTGTATGTTTGCAGGAATGATTTTTCG
CAAGGAACCATTCTTTTATGGTCATGACAATCAAGACCAGCTTGTCAAAA
TTGCAAAGGTTCTGGGAACCGATGAGTTAAATGCATACTTGGAAAAATAT
CATTTAGAGCTTGATCCGCAGCTTGAAGCTCTAGTTGGAAGGCATAGCAG
GAAGCCATGGTCCAGATTCATTAATTCAGATAATCAGCATCTAGTTTCCC
CAGAGGCCATTGATTTTCTTGATAAGCTTCTTCGCTATGATCACCAGGAC
AGGCTTACAGCCAGAGAGGCAATGGCTCATCCTTATTTCTATCAAGTGAG
GGCTGCAGAAAATAGCAGAGTCCGCGCGCATTAGCTCCATGCTTAGTCCC
TTCCTGAGTATACTTGTATTTCATTTGGGCCCATTCTTATGGATGGAGTA
TATTTCTGGTCTATTGATAAGTCGTTGTACCAGTAGTCTATAGGTCGCAT
CCATATTTTCAGATGGTCTATCGACAAGTCGTTGGTAGTATACTTGTATT
TCATTTGAGCTTTAATGTTGCTCGTGTGGACTGTACAGCTTGTTCCGTTG
TGTTTGCCTTATACATGTCAATTATTTGTACAAAATTACAGATAATAACT
CTTCTTTTG
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