CX047743

Overview
NameCX047743
Unique NameCX047743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = -1
Query:  254 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 616
            T  +Y  L +L+ +       +LAFPC+Q+G  E G + +I+ FA + +   FPIF+K+ + G  A P ++ L  S   +     +WNF KFLV  EG VV  + P      I K+   L+
Sbjct:   83 TEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDSVQKI----PRWNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLV 199          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  251 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 610
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R++   +  S++ DI   L+
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX5_HUMAN (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  251 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 610
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R++   +  S++ DI   L+
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX1_MACFU (Glutathione peroxidase 1 OS=Macaca fuscata fuscata GN=GPX1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = -1
Query:  254 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 616
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIAWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALL 194          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 51/139 (36.69%), Postives = 69/139 (49.64%), Query Frame = -1
Query:  254 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 610
            + Y EL+ L ++ +   + +L FPCNQFG QEPG N +I       R    F   F +F+K DVNGDN   ++  LKS          S   LF D      I+WNF KFLV  +G  V R+   T    ++ DI + L
Sbjct:   77 ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSCPPTSELLGSPEHLFWDPMKVHDIRWNFEKFLVGPDGAPVMRWFHQTPVRVVQSDIMEYL 215          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 50/133 (37.59%), Postives = 68/133 (51.13%), Query Frame = -1
Query:  266 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 604
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   79 YLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPIMRWYHRTTVSNVKMDI 211          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = -1
Query:  266 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 604
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDI 211          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 50/133 (37.59%), Postives = 68/133 (51.13%), Query Frame = -1
Query:  266 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 604
            Y EL+ L ++    GL++L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  V R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  266 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 604
            Y EL+ L ++ +  GL IL FPCNQFG QEPG+N +I   A  +       F   F +F+K DVNG+     Y  LK+S      L G              I+WNF KFLV  +G  + R+   T+  S++ DI
Sbjct:   79 YVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEI--LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDI 211          
BLAST of CX047743 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = -1
Query:  254 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKS-------------------SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 616
            T  +YT+++ L  +   +GL +L FPCNQFG QE   NE+I    C +       F+  F +F+K +VNG+ A PL+  L+                    +   +  + + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   55 TVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLL 199          
The following BLAST results are available for this feature:
BLAST of CX047743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX8_DANRE2.183e-1433.88Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX5_MACFA4.864e-1435.71Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX5_HUMAN4.864e-1435.71Epididymal secretory glutathione peroxidase OS=Hom... [more]
GPX1_MACFU6.352e-1433.79Glutathione peroxidase 1 OS=Macaca fuscata fuscata... [more]
GPX6_RAT8.296e-1436.69Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]
GPX3_RAT8.296e-1437.59Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX3_HYLLA8.296e-1437.59Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX3_CEBAP8.296e-1437.59Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]
GPX3_BOVIN8.296e-1437.04Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]
GPX1_BOVIN8.296e-1432.65Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C07-E13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047743 ID=CX047743; Name=CX047743; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTAGAGTCTCACCAAGCACCTTTTATTTTGAATTA
CAAAAACTGGGGACATTCATTACATACAAACCAGGCACTTATCAACTGAA
TTTACTTCGACATTAGGAAACTTCATTATATGTAAACAGATATTGAGACA
AAGCTAAACATATATTTCCACCAGAGTGCTTATACAGCATGATACTCTAG
TTTTATTAGCAAGAAGCTGATCATGCAAGCTGTAGCAGCGGTTAAGCAGT
CTCCAGAAGTTTCTTTATATCCTTCTCAATGCTCAGAGGGCTAGTGGTGG
GGGCATAACGCTCAACAACATTCCCCTCCTTATCCACCAAGAACTTGGAA
AAGTTCCACTTGATGCTGTCTCCAAAAAGTCCACCTTTGCTGGATTTCAG
ATGCTTGTATAAAGGAGCAGCATTATCACCATTAACATCAACCTTATCAA
ATATGGGAAACTCAGCCTTAAAGCGAGTGCATGCAAATTCTTGAATCTGT
TCATTGTCTCCTGGCTCTTGAGCTCCAAACTGATTACAAGGAAAGGCCAG
AATCTCCAAGCCTTGATTCTTGTACTTGTCGTACAACTGACTCAGCTCAG
TGTAGTTTGAATTGGT
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