EY692383

Overview
NameEY692383
Unique NameEY692383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692383_ssr174 microsatellite EY692383_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.080e-44
Identity = 103/138 (74.64%), Postives = 106/138 (76.81%), Query Frame = 3
Query:   60 MAPLGEKKPAEKKLA----AFKAPAAEKKSRAEXXXXXXXXXXXXXXXXXTVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK A    A K P A KK   E                 ++ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAEKKPAEKKPAEEKKAEKTPKAGKKLPKESGSSGADKKKKKSKK--SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 136          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 179.874 bits (455), Expect = 1.080e-44
Identity = 106/147 (72.11%), Postives = 110/147 (74.83%), Query Frame = 3
Query:   60 MAPLGEKKPAEKKLA----------AFKAPAAEKKSRAEXXXXXXXXXXXXXXXXX---TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK A          A KAPA EKK +A                     +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAEKKPAEKKPASEKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 146          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 104/148 (70.27%), Postives = 108/148 (72.97%), Query Frame = 3
Query:   60 MAPLGEKKPAEKKLAAFKAPAAEKKSRAEXXXXXXXXXXXXXXXXX--------------TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK AA K    E+KS+AE                               +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPRAEKKPAEKKPAAEKP--VEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 146          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 101/132 (76.52%), Postives = 104/132 (78.79%), Query Frame = 3
Query:   75 EKKPAEKKLAAFKAPAAEKKSRAEXXXXXXXXXXXXXXXXXT---VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            EKKPAEK  AA  A AAEKK +A                  +   VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:   10 EKKPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 141          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 103/139 (74.10%), Postives = 107/139 (76.98%), Query Frame = 3
Query:   60 MAP-LGEKKPAEKKLA----AFKAPAAEKKSRAEXXXXXXXXXXXXXXXXXTVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP   EKKPAEKK A    A K P AEKK   +                 +VETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAAEKKPAEKKPAGKAPAEKLPKAEKKISKDAGGSEKKKKKSKK----SVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 135          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 101/137 (73.72%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   60 MAPLGEKKPAEKKLAAFKA---PAAEKKSRAEXXXXXXXXXXXXXXXXXTVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK    KA   P AEK  R                   +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAEKKPAEKKPVEEKAEKKPKAEK--RVPGAKEGGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 135          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.406e-44
Identity = 101/137 (73.72%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   60 MAPLGEKKPAEKKLAAFKA---PAAEKKSRAEXXXXXXXXXXXXXXXXXTVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK    KA   P AEK  R                   +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAEKKPAEKKPVEEKAEKKPKAEK--RVPGAKEGGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 135          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.105e-44
Identity = 102/146 (69.86%), Postives = 108/146 (73.97%), Query Frame = 3
Query:   60 MAPLGEKKPAEKK----LAAFKAPAAEKKSRAEXXXXXXXXXXXXXXXXX--------TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK     A  KAPAA KK +AE                         +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAEKKPAEKKPAEEKAGEKAPAAGKKPKAEKRLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 146          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.105e-44
Identity = 102/146 (69.86%), Postives = 108/146 (73.97%), Query Frame = 3
Query:   60 MAPLGEKKPAEKK----LAAFKAPAAEKKSRAEXXXXXXXXXXXXXXXXX--------TVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP  EKKPAEKK     A  KAPAA KK +AE                         +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAEKKPAEKKPAEEKAGEKAPAAGKKPKAEKRLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTK 146          
BLAST of EY692383 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 177.563 bits (449), Expect = 5.361e-44
Identity = 99/138 (71.74%), Postives = 104/138 (75.36%), Query Frame = 3
Query:   60 MAPLGEKKPAEKKLA----AFKAPAAEKKSRAEXXXXXXXXXXXXXXXXXTVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 461
            MAP   KKPAEKK      A + PA +K    +                 +VETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK
Sbjct:    1 MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 138          
The following BLAST results are available for this feature:
BLAST of EY692383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_SOLLC1.080e-4474.64Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B11_ARATH1.080e-4472.11Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B6_ARATH1.411e-4470.27Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B10_ARATH1.411e-4476.52Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B4_ARATH2.406e-4474.10Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B11_ORYSJ2.406e-4473.72Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI2.406e-4473.72Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_ORYSJ4.105e-4469.86Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI4.105e-4469.86Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_SOLLC5.361e-4471.74Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-059-H05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692383 ID=EY692383; Name=EY692383; organism=Citrus sinensis; type=EST; length=674bp
CGGCGGGTCCGGGTCCGGATTCCCGGGTCGACCCCGCGTCTGAAAGTAAA
AGAAATCAAATGGCTCCTTTAGGGGAGAAAAAGCCCGCCGAGAAGAAGCT
GGCAGCCTTTAAGGCCCCNGCTGCCGAGAAAAAATCGAGGGCTGAGAAGA
AGCTTCCGAAAGACGGCGCCGACAAGAAGAAGAAGAAAGTGAAGAAGACC
GTGGAGACCTACAAGATCTACATATTCAAGGTGCTGAAGCAGGTGCATCC
TGATATAGGAATCTCCAGCAAGGCCATGGGTATCATGAACAGCTTTATCA
ACGATATCTTCGAGAAATTGGCTCAGGAGTCGTCTCGTCTCGCGAGATAC
AACAAGAAGCCCACTATCACTTCTCGTGAGATCCAGACTGCTGTTAGACT
TGTCTTGCCCGGTGAGCTTGCCAAGCATGCCGTTTCTGAAGGCACCAAGG
CTGTCACTAAGTTTACTAGCTCTTAATGAACCTATAGCTTCAATAATTCA
ATTAGTATCTTCTCTTTCTAGCTTGGGCTCTGCAATTTTTAAGGTCCTGT
TTCTTTTATTTTCCTTTTGGTTGTAGATTTTCTCTTTTGTTTACTTTTTG
TATCTACCCTTCCCAACAACCTAATCGAAGTTCTTTTTGCTCAAGTTCAA
TTATCAAAAAAAAAAAAAAAAAAG
back to top