CX047650

Overview
NameCX047650
Unique NameCX047650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.072e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.707e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLF FGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            M TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.875e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of CX047650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_AMBTC1.587e-1397.22Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA2.072e-1397.22Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA2.707e-1394.44Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO2.707e-1394.44Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU2.707e-1394.44Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU2.707e-1394.44Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV2.707e-1394.44Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR4.617e-1397.22Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA6.030e-1394.44Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU7.875e-1394.44Photosystem II reaction center protein I OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15F05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F05-L10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047650 ID=CX047650; Name=CX047650; organism=Citrus sinensis; type=EST; length=399bp
TTTTTTTTATTTTCAATTAGGAGAGATGGCTAAGTGGATTAAAGCGTCGG
ATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATCCCTCT
CTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTTAGCGA
ACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCCTAAGA
ACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTTCGCGT
CCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAGAGCGA
AACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAGCATTA
CACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATAGCCT
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