CX047634

Overview
NameCX047634
Unique NameCX047634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047634 vs. ExPASy Swiss-Prot
Match: YO289_YEAST (Uncharacterized protein YOR289W OS=Saccharomyces cerevisiae GN=YOR289W PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.868e-23
Identity = 57/156 (36.54%), Postives = 89/156 (57.05%), Query Frame = -2
Query:  130 LRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETA--------NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRK----RIRLTRYQSTLFALHYSDYASYVK 561
            LRGCIGT     + +G + Y+L +AL+DRRF PIQ REL  L+C+ +IL +F+T          +  DWE+G HG+ + F  P+  T  SAT+LP+V   + W K +   +L+ KAG+ G I+E +       I + RY+    ++ Y ++   +K
Sbjct:   92 LRGCIGTFAKMPIAHGIEKYSLIAALEDRRFSPIQKRELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSATFLPDVMPEQHWNKEDTFANLIEKAGYWGNISEVMDNFETYFIEVIRYEGKKSSITYEEFNKQLK 247          
BLAST of CX047634 vs. ExPASy Swiss-Prot
Match: Y464_KLULA (Uncharacterized protein KLLA0D02464g OS=Kluyveromyces lactis GN=KLLA0D02464g PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.976e-22
Identity = 57/162 (35.19%), Postives = 92/162 (56.79%), Query Frame = -2
Query:  127 GEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET---------ANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIR----LTRYQSTLFALHYSDYASYVKT 573
            GE +LRGCIGT     +  G K YAL SAL+D RF PI+  EL  L C  ++L+ F+T         + +  +WE+G HG+ I+F  P+ ++R SAT+LPEV   +GW + E  ++L+ KAG    + E ++   +    + RY+ T   + + ++ + + T
Sbjct:   61 GEYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQLRCGCNLLSQFKTIYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEVIPEQGWDQRETFENLIEKAGCWNYLEEVMKHWEKYFDEVIRYEGTKSEIAWDEFETGLST 222          
The following BLAST results are available for this feature:
BLAST of CX047634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YO289_YEAST8.868e-2336.54Uncharacterized protein YOR289W OS=Saccharomyces c... [more]
Y464_KLULA1.976e-2235.19Uncharacterized protein KLLA0D02464g OS=Kluyveromy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15E05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E05-J10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047634 ID=CX047634; Name=CX047634; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTAACTTAAATATTTGTTTAGGCCATACCAGCTTTGCT
GTTTTAGCGAAAGCGGTTTGGAAGAATCAATAGTTGCCAGGCTTAGCCCC
AAGAATGGACGGAGCTGCACCCTAGTTGTCTTCACATAAGAGGCATAGTC
GCTGTAGTGCAATGCAAATAGTGTGCTCTGGTAACGAGTCAGTCGTATAC
GCTTGCGGAGTGACTCGGTGATGGGACCACTGAAGCCTGCTTTTCGCATC
AGTGAGTCGATTGCCTCCACTTTAGTCCATCCTTCATGGGCAGCCACTTC
AGGAAGGTATGTGGCACTTCGCCTTGTACTATATTCAGGGTCAGTAAACT
CAATAATTAAACCATGTGTTCCAACCTCCCAGTCAAGATAGTTGTTAGCA
GTTTCAAAATCAGTCAAAATAGAAACTGTACATTCCAAGGATGGCAGCTC
TCTAGCTTGTATAGGAGGAAACCTTCGGTCCTTCAATGCACTGGTCAAAG
CATAGTCCTTAAAGCCATTAATCAAGCAACGAGCTTCCAGAGTTCCGATA
CATCCACGCAAACGAGGTTCCCCACCATTCACCCCT
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