CX043577

Overview
NameCX043577
Unique NameCX043577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.882e-39
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = -2
Query:  217 GLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQR 552
            G  IG++L+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R  GYG+ +NIINGGIECG+G N  V +RIGF+  +C    + PGD+LDCY+QR
Sbjct:  131 GQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQR 242          

HSP 2 Score: 27.335 bits (59), Expect = 3.882e-39
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = -1
Query:  554 YYGRGPIQLSWNYNYLRCGE 613
            +YGRGPIQL+   NY   G+
Sbjct:  113 FYGRGPIQLTGQSNYDLAGQ 132          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.043e-39
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  265 GLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCG 552
            G  IG +LLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RL G+G+ +NIINGG+ECG+G ++ V++RIGF+  +CG
Sbjct:  206 GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          

HSP 2 Score: 38.1206 bits (87), Expect = 5.043e-39
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:  557 KYYGRGPIQLSWNYNYLRCG 616
            KY+GRGPIQ+S NYNY  CG
Sbjct:  187 KYFGRGPIQISHNYNYGPCG 206          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.587e-39
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = -2
Query:  217 GLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQR 552
            G  I ++L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R  G G+ +NIINGGIECG G NAAV +RIG++  +CG   + PGD+LDCYNQR
Sbjct:  137 GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQR 248          

HSP 2 Score: 30.4166 bits (67), Expect = 6.587e-39
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = -1
Query:  545 KYYGRGPIQLSWNYNYLRCGERPR 616
            +YYGRGPIQL+   NY + G   R
Sbjct:  118 RYYGRGPIQLTNQNNYEKAGNAIR 141          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = -2
Query:  193 LGITITYGAEKGLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRP*GLNLMA 585
            L     YG   G  IGE+LLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+ GYG+ +NIINGG+ECG G +  V NRIGF+  +C   GI  G +LDCY+QRP    L A
Sbjct:  203 LSYNYNYGPA-GEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.882e-38
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  214 ITITYG---AEKGLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRP 579
            I ITY       G  IG +LLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+ GYG  +NIINGG+ECG G +  V +RIGF+  +C   G+  GD+LDCYNQRP
Sbjct:  192 IQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRP 316          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.673e-37
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = -2
Query:  217 GLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQR 552
            G  I ++L+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+ GYG+ +NIINGGIECG+G NA V +RIG++        + PGD+LDCYNQR
Sbjct:  138 GKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQR 249          

HSP 2 Score: 28.4906 bits (62), Expect = 2.673e-37
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = -1
Query:  554 YYGRGPIQLSWNYNYLRCGE 613
            YYGRGPIQL+   NY   G+
Sbjct:  120 YYGRGPIQLTGQSNYDLAGK 139          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.695e-37
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = -2
Query:  217 GLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQR 552
            G  +G +L+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+ GYG+ +NIINGGIECG G N A  +RIG++  +C   G   G +LDCYNQR
Sbjct:  146 GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQR 257          

HSP 2 Score: 29.261 bits (64), Expect = 7.695e-37
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = -1
Query:  557 YYGRGPIQLSWNYNYLRCG 613
            YYGRGPIQL+   NY   G
Sbjct:  128 YYGRGPIQLTGQSNYQAAG 146          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.216e-36
Identity = 59/116 (50.86%), Postives = 88/116 (75.86%), Query Frame = -2
Query:  208 GLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQG-GNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRP*G 552
            G  +G +L+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI  +W PS +D ++GRL GYG+ +NIINGG ECG+G      ++R+G++  +C  F +  GD++ C +Q+P G
Sbjct:  139 GDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          

HSP 2 Score: 33.113 bits (74), Expect = 2.216e-36
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = -1
Query:  554 YYGRGPIQLSWNYNYLRCGE 613
            YYGRGPIQL+  YNY   G+
Sbjct:  121 YYGRGPIQLTHKYNYQLAGD 140          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 69/113 (61.06%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  196 LLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGG-NAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRP*GLNLM 531
            LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI E W PSA D  AGR+ GYG+ +NIINGGIECGQGG N A  NRIGF+ T+C   G   G +LDCY QRP G  L+
Sbjct:  185 LLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CX043577 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.150e-33
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = -2
Query:  214 YGAEKGLGIGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIEEWKPSANDVNAGRLKGYGLTSNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRP 567
            YGA  G  IG +LL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+ GYG+ +NII+GG+ECG+G  + V +RIG++            D+LDCYNQ+P
Sbjct:   93 YGAA-GKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKP 198          

HSP 2 Score: 35.039 bits (79), Expect = 2.150e-33
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:  554 YYGRGPIQLSWNYNYLRCGE 613
            Y+GRGPIQ+S+NYNY   G+
Sbjct:   79 YFGRGPIQISYNYNYGAAGK 98          
The following BLAST results are available for this feature:
BLAST of CX043577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_SOLLC3.882e-3960.71Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI4_SOLTU5.043e-3965.63Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIP_TOBAC6.587e-3960.71Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI9_ORYSJ7.532e-3956.49Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ4.882e-3857.60Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY2.673e-3758.93Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_ORYSJ7.695e-3758.93Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ2.216e-3650.86Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_POPTR2.679e-3661.06Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_AVESA2.150e-3350.85Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A09-A18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043577 ID=CX043577; Name=CX043577; organism=Citrus sinensis; type=EST; length=619bp
CCCCCCCTTTTTTTGATGGTGAAGACTCATCGATCCATGTTGGATCAGTC
TTATTTAATTTACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGA
CCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAG
CTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCA
GATTAAGGCCTTAAGGTCGTTGGTTGTAGCAATCAAGACTGTCACCAGGC
TGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACG
TACAGCGGCATTCCCACCTTGGCCACATTCAATTCCACCGTTGATTATAT
TTGAGGTTAGACCGTATCCTTTAAGCCGGCCGGCGTTTACGTCATTTGCT
GATGGTTTCCATTCTTCGATAATGACTTCGTGGCACGATGGCTTTGGTGG
CTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGAT
CAGTAGCAAGAAGGTCTGGATTGTTCAACAACTCCTCTCCTATCCCTAGG
CCTTTCTCCGCACCGTAAGTAATTGTAATTCCAAGAGAGTTGAATTGGAC
CTCGGCCATAGTACTTCCC
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