CV713174

Overview
NameCV713174
Unique NameCV713174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.677e-47
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = -3
Query:  356 TACVAIIRDKQLVV-ANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAG--GEGCDNMTMILVQF 856
            TA  A+I D Q++  ANAGDSR VL RKG A  LS DHKP+ +VEK RI  AGGFI  GRVNGSL L+RAIGD E+K + SLP EKQIVTA PD+    +  DDEFL++ACDGIWDC SSQ++V+FVR  +     L VICE + DRC+A ++   G GCDNMT+ +V F
Sbjct:  122 TATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNNDVEKARITAAGGFIDFGRVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAF 291          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 8.059e-44
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = -3
Query:  356 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILVQF 856
            TACV ++   +++VANAGDSR VL R G+A++LS DHKP+ EVE +RI  AGG I+ GRVNG LNL+RA GD  +K N+ L  ++Q++TA PD+    L  +DEF+V+ACDGIW+ + SQ++VDFVRD L   +  + +C+ + D CLA S  G+  GCDNMT+I   F
Sbjct:  318 TACVCLVGKDKVIVANAGDSRAVLCRNGKAVDLSVDHKPEDEVETNRIHAAGGQIEDGRVNGGLNLSRAFGDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDLLAKGSSCAEVCDALCDACLADSTDGDGTGCDNMTVICTTF 486          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 96/179 (53.63%), Postives = 117/179 (65.36%), Query Frame = -3
Query:  326 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA--PSAGGEGCDNMTMILVQFKILSNNGPSA 856
            TA V +    +L  ANAGDSR VL  KG A  LS DHKP  E EK RI  AGGF+  GRVNG+L L+RAIGD EFK N +L  EKQIVTA PD+   E+ DDDEF+V+ACDGIWDC +SQ++++FVR  +   T L  I E + D C+A      G GCDNMT+ +V   +L  N  SA
Sbjct:  121 TATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFGRVNGNLALSRAIGDFEFK-NSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIV--ALLQENDKSA 296          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.593e-42
Identity = 88/167 (52.69%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  362 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA--GGEGCDNMTMILV 856
            TA V +I++  +   NAGDSR V S  G+A  LS DHKP  E E  RI+ AGG+++  RVNG+L L+RA+GD  FK   + PAE+QIVTA PD+ T +L  D EF+V+ACDGIWD +++QE+VDFVR++L  +     ICE++  RCLAP    GG GCDNMT++LV
Sbjct:  118 TAVVVLIKEGDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGGWVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLV 284          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 169.859 bits (429), Expect = 1.680e-41
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = -3
Query:  269 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR----VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQPPSDQQSKLASSSAGT 856
            TACV +IR+ Q+VV NAGD+RCV+SR GQA+ LS DHKP+   E  RI+ AGG +   R    VN  + ++RAIGD+ +K NK L  E+Q++T +P+I   +L DD EFLVIACDG+WD L++Q +VDFVR  L N  +LSVICE +    +  +      DNM++ILV+F             P  ++ ++ A+SS  T
Sbjct:  153 TACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAI--TRDPPSTDNMSVILVRFL-----------HPEGNRGARAATSSTST 339          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.858e-40
Identity = 83/169 (49.11%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAG-GEGCDNMTMILVQFK 856
            TA VA+I  K L VANAGDSR  L+R G+  ++SKDHKPD E EK RI +AGGF+  GRVNG+L+L+RA+GD+E+K +     E+QI+TA PD+   +L   D+FL++ CDG+++    Q++++F+  +L N   L    EK+ D+ LA     G GCDNMT IL+QFK
Sbjct:  127 TANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDEQEKKRIERAGGFVSDGRVNGNLSLSRALGDLEYKKDNRFKPEEQIITALPDVKVTQLSAADKFLLMGCDGVFETWDHQQILNFINSELKNTQNLQKAAEKLLDQLLAKDTSLGTGCDNMTCILIQFK 295          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.739e-38
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = -3
Query:  296 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL-TNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQPPSDQQS 856
            TACV IIR  Q++V N GDSRCVLS+ GQA++LS DHKP  E E++RI +AGG + + R+ G L  +RAIGD  +K N+++P  +Q+VT  PDI    + DD EFLVIA DG+WD + +  +V FVR +L   E  L   CEK+   CL  +      DN T ILV+FK +  +    A      Q +
Sbjct:  144 TACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVFLQRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVRQELRPGEENLRETCEKLVGHCLHSN------DNATAILVKFKPIEEDPDEVASARDEHQHN 325          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 80/169 (47.34%), Postives = 114/169 (67.46%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAG-GEGCDNMTMILVQFK 856
            TA VA+I  K L VANAGDSR  L+R G+  ++SKDHKPD + EK RI +AGGF+  GR NG+L+L+RA+GD+E+K +     E+QI++A PD+   +L   D+FL++ CDG+++    Q++++FV  +L +   L    EK+ D+ LA     G GCDNMT ILV FK
Sbjct:  127 TANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIERAGGFVSDGRANGNLSLSRALGDLEYKKDSRFKPEEQIISALPDVKVTQLTASDKFLLMGCDGVFETWDHQQILNFVNQELKSSQNLQKATEKLLDQLLAKDTSLGTGCDNMTCILVLFK 295          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C3_PARTE (Probable protein phosphatase 2C 3 OS=Paramecium tetraurelia GN=GSPATT00031056001 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.628e-36
Identity = 83/173 (47.98%), Postives = 111/173 (64.16%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTN----ETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 856
            TA VA+I    L VANAGDSR VL R     ++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L   +Q++ A PD+   EL   D+F+++ CDG+++ L+ QEL+  V   L N    E  LS   E + D+ LAP ++ G GCDNMT ILV  K
Sbjct:  127 TANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLK 299          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.628e-36
Identity = 83/157 (52.87%), Postives = 104/157 (66.24%), Query Frame = -3
Query:  362 LVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILV 823
            LV  NAGDSR VL+  G A  LS DHKP L  EK RI+ A GF+++ RVNG+L L+RAIGD EFK N  L  E+QIVT  PDI    L  D DEF+++ACDGIWDCL+SQ+ VD V   L     L+ I  ++ D C AP+  G   GCDNM++++V
Sbjct:  134 LVCGNAGDSRTVLATDGNAKALSYDHKPTLASEKSRIVAADGFVEMDRVNGNLALSRAIGDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWDCLTSQDCVDLVHLGLREGKTLNEISSRIIDVCCAPTTEGTGIGCDNMSIVVV 290          
The following BLAST results are available for this feature:
BLAST of CV713174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
PP2C2_SCHPO2.677e-4758.82Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PP2C1_CAEEL8.059e-4451.48Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
PP2C3_SCHPO1.164e-4253.63Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
PP2C2_CAEEL2.593e-4252.69Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
P2C42_ORYSJ1.680e-4145.50Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
PP2C6_PARTE1.858e-4049.11Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
P2C21_ORYSJ1.739e-3845.21Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
PP2C5_PARTE2.966e-3847.34Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
PP2C3_PARTE1.628e-3647.98Probable protein phosphatase 2C 3 OS=Paramecium te... [more]
PP2C2_YEAST1.628e-3652.87Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713174 ID=CV713174; Name=CV713174; organism=Citrus sinensis; type=EST; length=858bp
GCTCACATTGTGGAATTGAAAGACACTATTCTCAGTAGTGATTTCAATTT
TGAAAACAAACCAGAGTAAAAGTACACACATGTACAGAGATCTTTAAGGA
TTATCTATCCCATTAAAATGAAAAAGCTTAAATATTTACAACCAAATCAT
GAGAATCGTTTTCCGAATGTAAAATCAGGGACCATGGTTCTGAGCTCAGC
AGTGTTTCAGACAGTAGAAAATGAGTACCATTTAGTCAGTGCAAAGAGTG
CTACAGCTAATTCGATTCAGTCCCTGCTGAACTGCTGGCTAACTTGGATT
GTTGGTCAGATGGTGGCTGCTCAGCCGCAGAAGGACCATTATTAGAAAGA
ATTTTAAACTGAACCAAGATCATGGTCATGTTGTCGCATCCTTCACCACC
AGCTGATGGAGCCAAGCACCGATCGAATACTTTCTCGCAAATGACTGATA
GTTTTGTTTCGTTGGTTAATTGATCCCTGACAAAATCGACAAGTTCTTGA
CTTGAAAGGCAATCCCAAATCCCATCACAAGCTATGACAAGAAACTCATC
GTCATCACAAAGTTCAATAGTACTTATATCAGGATTGGCAGTCACAATCT
GTTTTTCAGCAGGCAAACTTTTGTTTAGCTTGAACTCCACATCTCCAATA
GCTCTCGCCAAATTTAAACTTCCATTAACACGTCCAACTTGTATAAAACC
ACCAGCTTTGAGAATTCTATCTTTCTCAACCTCAAGATCAGGCTTATGGT
CTTTAGATAGATTAAGTGCCTGGCCCTTCCTCGATAACACACAACGAGAA
TCACCAGCATTTGCAACCACGAGTTGCTTGTCTCTAATGATTGCTACGCA
AGCTGTAC
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