CV713174

Overview
NameCV713174
Unique NameCV713174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.055e-35
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE----TKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 856
            TA VA+     L VANAGDSR VL R     ++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L + +Q++ A PDI  +EL   D+FL++ CDG+++ L  Q+L+ F+  +L N+      L  + E + D  +AP ++ G GCDNMT +++  K
Sbjct:  127 TANVALFHKNVLYVANAGDSRSVLCRNNTNYDMSVDHKPDNYEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKRDSKLRSNEQLIIALPDIKKVELNQTDKFLLMGCDGVFETLDHQDLLKFINQKLGNQQITPQLLGRVAEDLLDNLIAPDTSAGTGCDNMTTLIIYLK 299          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C3_YEAST (Protein phosphatase 2C homolog 3 OS=Saccharomyces cerevisiae GN=PTC3 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.838e-35
Identity = 83/171 (48.54%), Postives = 111/171 (64.91%), Query Frame = -3
Query:  362 TACVAIIRD--KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLT-NETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILV 856
            TA V ++    K L+ AN+GDSR VLS  G +  +S DHKP L  EK RI+ A GF+++ RVNG+L L+RAIGD EFK N  L   +Q+VT  PDI    L  D+DEF+++ACDGIWDCL+SQE VD V   ++     LS I  ++ D C +P+  G   GCDNM++ +V
Sbjct:  121 TATVILVSQLKKLLICANSGDSRTVLSTGGNSKAMSFDHKPTLLSEKSRIVAADGFVEMDRVNGNLALSRAIGDFEFKSNTKLGPHEQVVTCVPDIICHNLNYDEDEFVILACDGIWDCLTSQECVDLVHYGISQGNMTLSDISSRIVDVCCSPTTEGSGIGCDNMSISIV 291          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C2_PARTE (Probable protein phosphatase 2C 2 OS=Paramecium tetraurelia GN=GSPATT00030171001 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 80/173 (46.24%), Postives = 109/173 (63.01%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL----TNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 856
            TA VA+I    L VANAGDSR VL R     ++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L   +Q++ A PD+  +EL   D+FL++ CDG+++ L+  +L+  V   L      E  L    E + D+ LAP ++ G GCDNMT ILV  K
Sbjct:  127 TANVALIYKNTLYVANAGDSRTVLCRNNANYDMSVDHKPDNPEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKRDSKLRVNEQLIIAIPDVKKVELGPQDKFLLLGCDGVFETLNHMDLLKQVNSTLGQAQVTEELLRKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLK 299          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 79/173 (45.66%), Postives = 110/173 (63.58%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL----TNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 856
            TA VA+I    L VANAGDSR VL R     ++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L + +Q++ A PD+   EL   D+F+++ CDG+++ L+ QEL+  V   +      E  L    E + D+ LAP ++ G GCDNMT ILV  +
Sbjct:  127 TANVALIYKNTLYVANAGDSRSVLCRNNTNHDMSVDHKPDNPEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKRDNKLRSNEQLIIALPDVKKTELTPQDKFILMGCDGVFETLNHQELLKQVNSTIGQAQVTEELLKKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLR 299          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 84/186 (45.16%), Postives = 113/186 (60.75%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ-------VGR-----------VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 856
            TACV +IR  QL+V +AGDSRCVLSR GQA  LS DHKPD E E++R+  AGG          +GR             G ++++R+IGD   K N+ LP E Q++T NPDI T+++ DD EFLVIA +G+W  +++Q +VD   D+L    +  VICE++    L PS      DN T+ILV FK
Sbjct:  195 TACVVVIRGDQLIVGHAGDSRCVLSRNGQASALSVDHKPDSESERERVQNAGGVAVGYSYRKIMGRWVTKKQWGFTDFKGRVSISRSIGDFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQFGL-PSG-----DNTTVILVLFK 374          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.824e-31
Identity = 71/180 (39.44%), Postives = 107/180 (59.44%), Query Frame = -3
Query:  317 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 856
            TA   ++    +   N GDSR VL R GQ    ++DHKP   VEK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+V+ACDGIWD +S++EL +FV+ +L     L  +C  V D CL   +     DNM+++LV F    +N P  +E+
Sbjct:  133 TAVGVMVSPTHMYFINCGDSRAVLCRNGQVCFSTQDHKPCNPVEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSVVLVCF----SNAPKVSEE 304          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: P2C16_ORYSJ (Probable protein phosphatase 2C 16 OS=Oryza sativa subsp. japonica GN=Os02g0598400 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.022e-30
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = -3
Query:  353 TACVAIIRDKQLVVANAGDSRCVLSRKGQ-ALNLSKDHKP--DLEVEKDRILKAGGFIQ------------------VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE-TKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 856
            TACV +IR  Q++V + GDSRCVLSR+G  A++LS DHKP    E E++R+  AGG                     +G   G + ++R+IGD  FK NK L  EKQ++  +PDI   ++ DD EFLVIA  G+W C+ S ++V ++ D+L+ E  +L VICE+V +  LA        +N T+ILVQFK
Sbjct:  145 TACVVVIRGNQMIVGHVGDSRCVLSRQGGLAIDLSFDHKPCTRTESERERVQNAGGRSLGLRCEQVMGNYVVKEQWVLGDFGGGVTISRSIGDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG------ENTTVILVQFK 328          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 70/180 (38.89%), Postives = 107/180 (59.44%), Query Frame = -3
Query:  317 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 856
            TA   +I  K +   N GDSR VL R GQ    ++DHKP    EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+++ACDGIWD +S++EL +FV+ +L     L  +C  V D CL   +     DNM+++LV F    +N P  +++
Sbjct:  133 TAVGVMISPKHIYFINCGDSRAVLYRSGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSIVLVCF----SNAPKVSDE 304          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: P2C18_ORYSJ (Probable protein phosphatase 2C 18 OS=Oryza sativa subsp. japonica GN=Os02g0599200 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 84/225 (37.33%), Postives = 125/225 (55.56%), Query Frame = -3
Query:  260 TACVAIIRDKQLVVANAGDSRCVLSRKGQ-ALNLSKDHKPDL-EVEKDRILKAGGFIQ------------------VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNN------GPSAAEQPPSDQQSKLASSSAGTESN 856
            TACV +IR  Q++V +AGDSRCVLSR+G  A++LS DHKP   E E++R+  AGG                     +G    S+ ++R+IGD  FK NK L  E+Q++  +PDI T ++  D EFLVIA  G+W C+ S ++V ++  +L    +L VICE++    LA        +N T+ILVQFK  +         P+A +   S+  S  A  + G++S+
Sbjct:  254 TACVVVIRGDQMIVGHAGDSRCVLSRQGGLAIDLSSDHKPRTSESERERVQNAGGISLGVDCEKVMENYVIKEQWILGYFGESVTISRSIGDFAFKQNKDLNREEQMLICDPDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQSGLASG------ENTTVILVQFKPGAFQFQYELVDPAAFDTAASNVASTSAGPAGGSDSD 472          
BLAST of CV713174 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.624e-30
Identity = 69/180 (38.33%), Postives = 107/180 (59.44%), Query Frame = -3
Query:  317 TACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 856
            TA   +I  K +   N GDSR VL R GQ    ++DHKP    EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+++ACDGIWD +S++EL ++V+ +L     L  +C  V D CL   +     DNM+++LV F    +N P  +++
Sbjct:  133 TAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSIVLVCF----SNAPKVSDE 304          
The following BLAST results are available for this feature:
BLAST of CV713174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
PP2C4_PARTE1.055e-3544.51Probable protein phosphatase 2C 4 OS=Paramecium te... [more]
PP2C3_YEAST6.838e-3548.54Protein phosphatase 2C homolog 3 OS=Saccharomyces ... [more]
PP2C2_PARTE1.523e-3446.24Probable protein phosphatase 2C 2 OS=Paramecium te... [more]
PP2C1_PARTE2.599e-3445.66Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]
P2C20_ORYSJ2.200e-3345.16Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
PPM1B_MOUSE7.824e-3139.44Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
P2C16_ORYSJ1.022e-3042.11Probable protein phosphatase 2C 16 OS=Oryza sativa... [more]
PPM1B_BOVIN2.973e-3038.89Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
P2C18_ORYSJ3.883e-3037.33Probable protein phosphatase 2C 18 OS=Oryza sativa... [more]
PPM1B_HUMAN6.624e-3038.33Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713174 ID=CV713174; Name=CV713174; organism=Citrus sinensis; type=EST; length=858bp
GCTCACATTGTGGAATTGAAAGACACTATTCTCAGTAGTGATTTCAATTT
TGAAAACAAACCAGAGTAAAAGTACACACATGTACAGAGATCTTTAAGGA
TTATCTATCCCATTAAAATGAAAAAGCTTAAATATTTACAACCAAATCAT
GAGAATCGTTTTCCGAATGTAAAATCAGGGACCATGGTTCTGAGCTCAGC
AGTGTTTCAGACAGTAGAAAATGAGTACCATTTAGTCAGTGCAAAGAGTG
CTACAGCTAATTCGATTCAGTCCCTGCTGAACTGCTGGCTAACTTGGATT
GTTGGTCAGATGGTGGCTGCTCAGCCGCAGAAGGACCATTATTAGAAAGA
ATTTTAAACTGAACCAAGATCATGGTCATGTTGTCGCATCCTTCACCACC
AGCTGATGGAGCCAAGCACCGATCGAATACTTTCTCGCAAATGACTGATA
GTTTTGTTTCGTTGGTTAATTGATCCCTGACAAAATCGACAAGTTCTTGA
CTTGAAAGGCAATCCCAAATCCCATCACAAGCTATGACAAGAAACTCATC
GTCATCACAAAGTTCAATAGTACTTATATCAGGATTGGCAGTCACAATCT
GTTTTTCAGCAGGCAAACTTTTGTTTAGCTTGAACTCCACATCTCCAATA
GCTCTCGCCAAATTTAAACTTCCATTAACACGTCCAACTTGTATAAAACC
ACCAGCTTTGAGAATTCTATCTTTCTCAACCTCAAGATCAGGCTTATGGT
CTTTAGATAGATTAAGTGCCTGGCCCTTCCTCGATAACACACAACGAGAA
TCACCAGCATTTGCAACCACGAGTTGCTTGTCTCTAATGATTGCTACGCA
AGCTGTAC
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