CV713169

Overview
NameCV713169
Unique NameCV713169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = -3
Query:  387 DKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 719
            +   VVVGTVTDD R+  VP L + AL  T+TAR RI KAGGE LTFDQLAL++P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVR KGRKFERARG+R+S G++
Sbjct:   78 ESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYK 188          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = -3
Query:  387 KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 725
            +E+K AVVVG +T D+R++++P L V AL+ T  AR+RI KAGG+ +TFDQLAL AP GQNTVLL GP+ ARE  +HFG AP  PHS TKPYV  KGRKFERARG+R SRG++
Sbjct:   75 RENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGYK 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 71/117 (60.68%), Postives = 96/117 (82.05%), Query Frame = -3
Query:  387 MKGKEDK-IAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            ++GK++K +AVV+GTVT+D+R+ +VP L V ALR T+ AR RI K GG+  TFDQLAL +P G+NTVL++G + ARE  KHFG APGVPHS+T+PYV+ KGRKFE+ARG+R+S G++
Sbjct:   72 LRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKGRKFEKARGRRSSCGYK 188          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 77/113 (68.14%), Postives = 86/113 (76.11%), Query Frame = -3
Query:  384 EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 722
            E K  V+VGTVTDD R+  VP L V ALRFT++ARARI KAGGE LT DQLALRAP G NTVLLRG K+AREA +HFG     PH H  PYVR +GRKFERARG+R SR F+V
Sbjct:   78 EGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = -3
Query:  399 KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNS 725
            +E  IAVVVGT+T+D+R+Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G  TVLL+G +NAREAV+HFGPAPG P SHTKPYVR KG   ERAR +R S
Sbjct:   75 REGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--ERARPRRRS 181          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.031e-34
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = -3
Query:  384 EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 722
            ++K  VVVGTVTDD R+  VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG     PH H  PYVR +GRKFERARG+R SR F+V
Sbjct:   78 QNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = -3
Query:  384 KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 731
            +G  +K  VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P +   GRKFERARG+R S+GF+V
Sbjct:   74 EGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFKV 186          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.317e-33
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = -3
Query:  399 KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNS 725
            +E  IAVVVGTVT+D+R+Y++P + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVR KG   E+AR  R +
Sbjct:   75 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 181          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.831e-33
Identity = 72/109 (66.06%), Postives = 85/109 (77.98%), Query Frame = -3
Query:  399 KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNS 725
            +E  IAVVVGT+T+D R+Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVR KG   E+A+  R S
Sbjct:   75 REGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKGH--EQAKPSRRS 181          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = -3
Query:  387 MKGK-EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            ++GK E+ IAVVVGTVT+D R    P + V ALR TE AR RI K GG+  TFDQLAL AP G+NTVL++G + AREA  HFG APGVPHS+T+PYV+ KGRK+E+ARG+R+S GF+
Sbjct:   72 LRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKGRKYEKARGRRSSCGFK 188          
The following BLAST results are available for this feature:
BLAST of CV713169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL18_DROPS2.835e-3666.6760S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]
RL18A_XENLA2.835e-3663.7260S ribosomal protein L18-A OS=Xenopus laevis GN=r... [more]
RL18_ANOGA2.400e-3560.6860S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18B_SCHPO6.982e-3568.1460S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18_SPOFR9.118e-3568.8160S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18A_SCHPO2.031e-3466.3760S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_YEAST7.719e-3461.2160S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18_BOMMO1.317e-3366.0660S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]
RL18_PLUXY3.831e-3366.0660S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_AEDAE5.003e-3362.3960S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713169 ID=CV713169; Name=CV713169; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTTGCAGGATTGGACAATCATTTATAAAAGCCATTT
TTACGACAAATGTGGCAGTATTTAGCACAAAGCAACATCCACAACAAAAC
TAAAACCAGTTCTCATGGTTCATTTTAATTCAACTAGGCATGCATGTATG
TGTGTAGAACTTGGGCAACTTTTAAATGAGGCATCCTGTCTTCACTTCTA
AACATCAAGCCCCGAAGGACATCCAAGATCTGTCTCAAACAAAAAAAAAT
CCAAAAATCCAAATATAACTTGCTAAGATATTGTCCCAAGAGATTTAAAA
TAGCAAGGAGAAAAAAAGAAAACACAACATTTGCATAAGGTGGTCGGCTG
CTCTGTATCCTTATGAATGAGTTCTGCATCTCAAACCCTGAAGCCTCTGC
TGTTCCTTTTTCCTCTAGCCCTCTCAAATTTTCTTCCCTTAAATCGCACA
TAGGGTTTGGTGTGGCTGTGTGGTACACCAGGAGCAGGTCCAAAGTGCTT
GACAGCCTCACGAGCATTCTTCGGACCTCTCAGGAGAACCGTGTTCTGAC
CCAAAGGAGCACGAAGAGCCAGTTGGTCAAATGTCAAGCATTCTCCCCCT
GCCTTCTCAATTCTTGCCCTTGCTGTCTCTGTGAACCTCAGTGCAGTAAC
CTTGAGTGCAGGAACTTCATACACACGAATATCATCAGTGACTGTTCCAA
CAACCACAGCAATCTTGTCCTCCTTGCCCTTCATGAATT
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