CV713169

Overview
NameCV713169
Unique NameCV713169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = -3
Query:  429 GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRK 728
            G+E KIAVV+GTVT+DIR+ EVP L V ALR T  AR RI KAGG+ +T DQLAL+APLG+ TVLL+GP+ AREA +HFGPAPGVP SHTKPYV  K R+
Sbjct:   74 GREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYVISKSRE 173          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  387 KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 731
            KGK+  IAV+VG V DD+R+  +PAL++ ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V  +G+  ER R  +    FR
Sbjct:   80 KGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGK--ERQRSSKRRHAFR 191          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.153e-29
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  387 KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 731
            KGK+  IAV+VG V DD+R+  +PAL+V ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+   +G+  ER R     R FR
Sbjct:   80 KGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGK--ERQRSSARRRAFR 191          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  387 KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 731
            K K   IAVVVG V DD+R+  +PA++V ALRF+++AR  I  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY   +G+  E  RG+R  R ++
Sbjct:   80 KSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGK--ETKRGRRTGRSYK 191          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  414 KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERAR 725
            K  KIAV VGTV DD R+ + P L V ALRFTETAR+RI KAGG+ L+FDQ AL  P G NT L++G   ARE  KHFG APG+P SH +PYVR +G KF+R++
Sbjct:   74 KSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGIKFQRSK 177          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  384 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 734
            M+ + D  AVVVGTVT+D R+  VP L V ALR TETAR RI  +GGE LTFDQL  R+P G    LLRG   AREAVKHF     G P    KPYVR KGRKFE+ARG+R+SR F+V
Sbjct:   71 MEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKGRKFEKARGRRHSRAFKV 184          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = -3
Query:  387 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            M+ + +  AVV+GTVT D R+  VP L V ALR TETAR RI  +GGE LTFDQL  R+P+G    LLRG   AREAVKHF     G P    KPYVR KGRKFE+ARG+R+SR F+
Sbjct:   71 MESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKGRKFEKARGRRHSRAFK 183          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = -3
Query:  447 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYV 734
            + G+E++ AVVVGTVTDD+R++E+P LKV+AL+ T   R RI K   + + F  LAL AP  Q +VLL  P+NAR+  +HF  AP +P  HTKPYV
Sbjct:   71 LPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYV 163          
The following BLAST results are available for this feature:
BLAST of CV713169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL18_TAEAS5.532e-3269.0060S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18_TRYBB1.780e-3058.2660S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_TRYCR1.153e-2959.1360S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_LEIMA1.666e-2856.5260S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_DICDI1.666e-2860.5860S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL18_THEPA2.841e-2860.1760S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_THEAN2.405e-2758.1260S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_SALSA5.371e-1952.0860S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002G20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713169 ID=CV713169; Name=CV713169; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTTGCAGGATTGGACAATCATTTATAAAAGCCATTT
TTACGACAAATGTGGCAGTATTTAGCACAAAGCAACATCCACAACAAAAC
TAAAACCAGTTCTCATGGTTCATTTTAATTCAACTAGGCATGCATGTATG
TGTGTAGAACTTGGGCAACTTTTAAATGAGGCATCCTGTCTTCACTTCTA
AACATCAAGCCCCGAAGGACATCCAAGATCTGTCTCAAACAAAAAAAAAT
CCAAAAATCCAAATATAACTTGCTAAGATATTGTCCCAAGAGATTTAAAA
TAGCAAGGAGAAAAAAAGAAAACACAACATTTGCATAAGGTGGTCGGCTG
CTCTGTATCCTTATGAATGAGTTCTGCATCTCAAACCCTGAAGCCTCTGC
TGTTCCTTTTTCCTCTAGCCCTCTCAAATTTTCTTCCCTTAAATCGCACA
TAGGGTTTGGTGTGGCTGTGTGGTACACCAGGAGCAGGTCCAAAGTGCTT
GACAGCCTCACGAGCATTCTTCGGACCTCTCAGGAGAACCGTGTTCTGAC
CCAAAGGAGCACGAAGAGCCAGTTGGTCAAATGTCAAGCATTCTCCCCCT
GCCTTCTCAATTCTTGCCCTTGCTGTCTCTGTGAACCTCAGTGCAGTAAC
CTTGAGTGCAGGAACTTCATACACACGAATATCATCAGTGACTGTTCCAA
CAACCACAGCAATCTTGTCCTCCTTGCCCTTCATGAATT
back to top