CV713163

Overview
NameCV713163
Unique NameCV713163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_DROME (60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.651e-15
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            ++KF  P +N+DKLWS+V  E  A+  K+     P+ID+ +FGY+K+LG+G LP  +PV+VKAK  SK AE KIK+AGG  +L+A
Sbjct:   67 QHKFR-PEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.927e-14
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  103 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 351
            ++N    P VN+D+LW++VP E + K    N    P+I+V Q GY KVLGKG LP+  PV+++ + VS+ AE+KIK+AGG V L A
Sbjct:   64 MKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.927e-14
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  103 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 351
            ++N    P VN+D+LW+++P E + K    N    P+I+V Q GY KVLGKG LPE  PV+V+ + VS+ AE+KIK+AGG V L A
Sbjct:   64 MKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.287e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  103 NKFHCPIVNVDKLWSMVPQEVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 345
            N F  P++N++KLWS++P E +    +  + D +P+ID+   GY KVLGKG +P+  P+VV+A+  SK AE+KI EAGG V L A
Sbjct:   66 NHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRARWFSKEAERKITEAGGVVELVA 149          
The following BLAST results are available for this feature:
BLAST of CV713163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL27A_DROME8.651e-1550.5960S ribosomal protein L27a OS=Drosophila melanogas... [more]
RL28B_SCHPO1.927e-1447.6760S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28A_SCHPO1.927e-1448.8460S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
RL27A_ERYGR3.287e-1447.0660S ribosomal protein L27a OS=Erysiphe graminis su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713163 ID=CV713163; Name=CV713163; organism=Citrus sinensis; type=EST; length=351bp
ATAACATAAACATCCAAAACTACATGTAAAAATAGTCAAATACTCAAAAA
CTGAAATCCAAAATATCACAAAAAATTTCTAAAAACAATAACAGTAAACC
TAAGCAGTAAGCACAACAGCCCCACCAGCTTCTTTAATTTTCTTCTCGGC
TGTCTTGGAAACAAGCTTGGCCTTCACCACAACGGGTTGGTTCTCAGGCA
AAACGCCCTTACCCAAAACCTTAAAGTAGCCAAACTGAGTCACATCGATC
ATTGGCACATTGTCTTTGGAAGCCTTGGCTTTGACCTCCTGAGGTACCAT
CGACCAAAGCTTGTCGACGTTCACAATTGGGCAATGAAATTTATTACGCA
G
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