CV713099

Overview
NameCV713099
Unique NameCV713099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_FAGEA (50S ribosomal protein L16, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.797e-59
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIIS 448
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGK+WVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYE+SGV E             MPIRTQF+IS
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKLWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVPEKIARKAISIAASKMPIRTQFLIS 134          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_COFAR (50S ribosomal protein L16, chloroplastic OS=Coffea arabica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.797e-59
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIIS 448
            +PKRTRFRKQHRGRMKGISYRGN ICFG++ALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKP+T RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV E+            MPIRTQFIIS
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGKFALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPITARPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTEHIARRAISIAASKMPIRTQFIIS 134          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_CUSEX (50S ribosomal protein L16, plastid OS=Cuscuta exaltata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.228e-59
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIIS 448
            +PKRTRFRKQHRG++KGISYRGNHICFGRYALQALEPAW+TSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG PEYWVAVVKPGRILYEM GV +             MPIRTQFIIS
Sbjct:    3 SPKRTRFRKQHRGKLKGISYRGNHICFGRYALQALEPAWLTSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGCPEYWVAVVKPGRILYEMGGVTKKIARRAFSIAASKMPIRTQFIIS 134          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_ACOCL (50S ribosomal protein L16, chloroplastic OS=Acorus calamus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.228e-59
Identity = 108/133 (81.20%), Postives = 116/133 (87.22%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGRMKG+SYRG+HICFGRYALQALEP+WITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWV+VVKPGRILYEM GV+E             MPIRTQFII+G
Sbjct:    3 SPKRTRFRKQHRGRMKGMSYRGSHICFGRYALQALEPSWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPAETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAIEIAASKMPIRTQFIIAG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_ACOAM (50S ribosomal protein L16, chloroplastic OS=Acorus americanus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.228e-59
Identity = 108/133 (81.20%), Postives = 116/133 (87.22%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGRMKG+SYRG+HICFGRYALQALEP+WITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWV+VVKPGRILYEM GV+E             MPIRTQFII+G
Sbjct:    3 SPKRTRFRKQHRGRMKGMSYRGSHICFGRYALQALEPSWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPAETRMGSGKGSPEYWVSVVKPGRILYEMGGVSETVARAAIEIAASKMPIRTQFIIAG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_PHAVU (50S ribosomal protein L16, chloroplastic OS=Phaseolus vulgaris GN=rpl16 PE=3 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.827e-59
Identity = 110/133 (82.71%), Postives = 116/133 (87.22%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +P+RTRFRKQHRGRMKGIS RGN ICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN            MPIRTQFIISG
Sbjct:    3 SPQRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_NANDO (50S ribosomal protein L16, chloroplastic OS=Nandina domestica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.827e-59
Identity = 107/133 (80.45%), Postives = 116/133 (87.22%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGR++M R  RRGGKIW+RIFPDKPVT+RPTETRMGSGKGSPEYWV+VVKPGRILYEM GV+E             MPIRTQF+I+G
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRKSMARYARRGGKIWIRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGRILYEMGGVSEIAAREAISIAASKMPIRTQFVIAG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_SOLTU (50S ribosomal protein L16, chloroplastic OS=Solanum tuberosum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.165e-58
Identity = 111/132 (84.09%), Postives = 113/132 (85.61%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIIS 448
            +PKRTRFRKQHRGRMKGIS RGNHI FG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN            MP RTQFIIS
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPKRTQFIIS 134          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_SOLBU (50S ribosomal protein L16, chloroplastic OS=Solanum bulbocastanum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.521e-58
Identity = 111/132 (84.09%), Postives = 113/132 (85.61%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIIS 448
            +PKRTRFRKQHRGRMKGIS RGN I FG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN            MPIRTQFIIS
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISLAASKMPIRTQFIIS 134          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_OLIPU (50S ribosomal protein L16, chloroplastic OS=Olimarabidopsis pumila GN=rpl16 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.521e-58
Identity = 109/132 (82.58%), Postives = 114/132 (86.36%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIIS 448
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV EN            MPI+TQFIIS
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIIS 134          
The following BLAST results are available for this feature:
BLAST of CV713099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_FAGEA1.797e-5983.3350S ribosomal protein L16, chloroplastic OS=Fagopy... [more]
RK16_COFAR1.797e-5983.3350S ribosomal protein L16, chloroplastic OS=Coffea... [more]
RK16_CUSEX5.228e-5981.8250S ribosomal protein L16, plastid OS=Cuscuta exal... [more]
RK16_ACOCL5.228e-5981.2050S ribosomal protein L16, chloroplastic OS=Acorus... [more]
RK16_ACOAM5.228e-5981.2050S ribosomal protein L16, chloroplastic OS=Acorus... [more]
RK16_PHAVU6.827e-5982.7150S ribosomal protein L16, chloroplastic OS=Phaseo... [more]
RK16_NANDO6.827e-5980.4550S ribosomal protein L16, chloroplastic OS=Nandin... [more]
RK16_SOLTU1.165e-5884.0950S ribosomal protein L16, chloroplastic OS=Solanu... [more]
RK16_SOLBU1.521e-5884.0950S ribosomal protein L16, chloroplastic OS=Solanu... [more]
RK16_OLIPU1.521e-5882.5850S ribosomal protein L16, chloroplastic OS=Olimar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002F06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713099 ID=CV713099; Name=CV713099; organism=Citrus sinensis; type=EST; length=732bp
CTCATGTCCAGTTCTGTAGTAGAGATGGCATTGAGAAAGAACCATCAATT
ATAACCCCAAAAGAACAAGATTCCGTAAACAACATAGAGGAAGAATGAAA
GGGATATCTTATCGAGGTAATCATATTTGTTTCGGCAGATATGCTCTTCA
AGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGGCGCC
GCGCAATGACACGAAATGTACGGCGCGGTGGAAAAATATGGGTACGTATC
TTTCCAGACAAACCCGTTACACTAAGACCCACGGAAACCCGTATGGGGTC
CGGTAAAGGATCCCCCGAATATTGGGTAGCCGTCGTTAAACCGGGTAGAA
TACTTTATGAAATGAGTGGAGTAGCTGAAAATATAGCTCGAAAGGCTATT
TCAATAGCGGCGTCCAAAATGCCTATAAGAACTCAATTCATTATTTCGGG
ATAGGAATGTCGAAACAAAGGAAATAAATCTTGGGTATAAAAAATGCGGG
TCTTCCCTTTTTTTTTTTACTTCGTCCTTTCAGTGCTTTACTTTAAATTA
AACATTAAAAAAACGGACTCAAAAAACGATATGATTCAACCTCAAACCCA
TTTGAATGTAGCAGACAATAGCGGTGCCCGAGAATTGATGTGTATTCGAA
TCATAGGAGCCAGTAATCGTAGATATGCTCATATTGGTGACGTTATTGTT
GCTGTGATCAAGGAAGCAGTACCCAATACGCC
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